Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_E21
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    29   0.69 
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   1.2  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    28   1.6  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    27   4.8  
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    26   6.4  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   6.4  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   8.5  

>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 751 RLIARRADCHEFPXSWTLRLXPRWGIMTAGFFKFGAVIEFGQSEVP 614
           ++ +   +CH  P +W      + G+   G   FG  +EF + E+P
Sbjct: 217 KITSAYTNCHGEPVAWGWDGAKKIGVKDCGKPDFGVPVEFKEGEIP 262


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -3

Query: 488 KISSKSVEVMIF---SKLSKLLSG*VNFIYFNYFCKYIFRINSSNFFRTNGKKSFIIRVP 318
           KI+SK   V +    ++ S LLSG  + + F  F KYI  +N   +    G  S+  R+ 
Sbjct: 54  KINSKGFTVYVLDATTRRSALLSGKHDTMIFTLFVKYITSLNHPEYLLLGG-YSYGARIS 112

Query: 317 IKFKIWILVERPLT 276
           +   I + +++ ++
Sbjct: 113 MHKSITLAIDKRIS 126


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 336 TFLPIGSKEIGTVYPKNIFTKVVKINKINSPREQLAEFRKDHYFDRFRGDFEST 497
           ++  I  + +  + PK+I  K++K +K +   E L +  K   FD+   + E T
Sbjct: 601 SYFNIVKRTLADMVPKSISLKMIKYSKEHIQHELLEQLYKSQAFDKLLQESEVT 654


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 657 KKPAVIMPQRGXRRNVQEXGNSWQSA 734
           K PA+I P  G +   Q   +SW  A
Sbjct: 115 KNPAIIEPMEGHQNEFQAVSSSWSDA 140


>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = +3

Query: 315 YWDPDNKTF-------LPIGSKEIGTVYPKNIFTKVVKINKINSPREQLAEFRKDHYFDR 473
           YW PDNK         L I  ++  T     + T + +++K N P + +  F    +FD+
Sbjct: 544 YW-PDNKDHALCLEGGLRISVQKYETFEDLKVNTHLFRLDKPNGPPKYIHHFWVHTWFDK 602

Query: 474 FRGDFES 494
              D ES
Sbjct: 603 THPDIES 609


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 384 NIFTKVVKINKINSPREQLAEFRKDHY---FDRFRGDFE 491
           N F K   + +I S    ++EF+K  Y   FD F+  F+
Sbjct: 163 NFFKKYRSVERIASLSRSISEFQKSFYEQVFDTFQSQFK 201


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +2

Query: 44  FVXFCCVIMCEDLKDCVSNIESTFDRTFIVLSLITTAVGVKIIVKLFRFYSLKY 205
           FV   C +     +D    +   F    I    I  AVG+  I KLF  YS+ +
Sbjct: 113 FVLLWCAVPMPRYEDSQGTVRIRFWFFLIFYYGIYNAVGLLWITKLFHIYSVNW 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,565
Number of Sequences: 5004
Number of extensions: 61645
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)