Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_E19
(995 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.063
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.083
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.19
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.25
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.25
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.1
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 5.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 9.5
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 26 9.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 9.5
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 9.5
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.063
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Frame = +1
Query: 766 PPLGXP-RXXTXPXPXXPGPPPXPXPXVPWXRPPGXAPXAP 885
PPLG R T P P P PP P +P PP AP
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP 444
Score = 30.3 bits (65), Expect = 0.44
Identities = 17/59 (28%), Positives = 20/59 (33%)
Frame = +2
Query: 491 RAXXXPPXPRYXPXTAXHXGXXXAXAPRPXXPXPPPPVGXXXAGAXPXSRPXPXTXVPP 667
R+ PP PR P T + P PPP + A A P T PP
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPP 416
Score = 29.5 bits (63), Expect = 0.77
Identities = 23/100 (23%), Positives = 28/100 (28%), Gaps = 1/100 (1%)
Frame = +2
Query: 371 PPPXIXXNXXXXRTXXPPPLXXTXPPPXRGPPXXXGXKXFR-AXXXPPXPRYXPXTAXHX 547
PP + PPP T P PP A P P ++
Sbjct: 241 PPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVS 300
Query: 548 GXXXAXAPRPXXPXPPPPVGXXXAGAXPXSRPXPXTXVPP 667
A A P PPPP G P + +PP
Sbjct: 301 AA--ALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPP 338
Score = 29.5 bits (63), Expect = 0.77
Identities = 46/193 (23%), Positives = 51/193 (26%), Gaps = 4/193 (2%)
Frame = +2
Query: 419 PPPLXXTXPPPXRG----PPXXXGXKXFRAXXXPPXPRYXPXTAXHXGXXXAXAPRPXXP 586
PPP PPP R PP G PP PR + AP P P
Sbjct: 311 PPP----PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Query: 587 XPPPPVGXXXAGAXPXSRPXPXTXVPPFXXGXAGHIXXNXXXXXXLXXXXXXAXXXPGGX 766
P G SR PP I P
Sbjct: 367 RSAPSTGRQPP-PLSSSRAVSNPPAPP------PAIPGRSAPALPPLGNASRTSTPPVPT 419
Query: 767 PPSXPPXSRPXPXXPXPAXLPXPAXXFXGXGPPAXRLXXPXXXXPXAXRXXXARXPVXPX 946
PPS PP + P P LP A PP+ + P A P P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPL-PPSAPIAPPLPAGMPAAPPLPPAAPA-PP 477
Query: 947 PXAXRAXXCPXSS 985
P A P +S
Sbjct: 478 PAPAPAPAAPVAS 490
Score = 29.5 bits (63), Expect = 0.77
Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
Frame = +2
Query: 407 RTXXPP-PLXXTXPP--PXRGPPXXXGXKXFRAXXXPPXPRYXPXTAXHXGXXXAXAPRP 577
RT PP P + PP P PP A PP P P A P P
Sbjct: 411 RTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLP 470
Query: 578 XXPXPPPP 601
PPP
Sbjct: 471 PAAPAPPP 478
Score = 28.3 bits (60), Expect = 1.8
Identities = 22/87 (25%), Positives = 24/87 (27%), Gaps = 1/87 (1%)
Frame = +3
Query: 582 SPXXPPQWGXXXRGPPPXPAPXPXPXSRPXXXAPXV-TSXXTXXXXXXXXXXAXPXXXXP 758
+P PP PP P P P S P P S + P
Sbjct: 400 APALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL 459
Query: 759 XXPPPRXPPXXDPPRAXXXRPXSXPXP 839
P PP PP A P P P
Sbjct: 460 PAGMPAAPPL--PPAAPAPPPAPAPAP 484
Score = 27.1 bits (57), Expect = 4.1
Identities = 24/99 (24%), Positives = 29/99 (29%), Gaps = 4/99 (4%)
Frame = +3
Query: 561 PXPRAXXSPXXPPQWGXXXRGPPPXPAPXPXPXSRPXXXAPXVTSXXTXXXXXXXXXXAX 740
P PR+ S P R PAP P R P + + +
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSL 423
Query: 741 PXXXXPXXPPPRXP--PXXDP--PRAXXXRPXSXPXPXG 845
P P PP P P P P P + P P G
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAG 462
Score = 26.6 bits (56), Expect = 5.4
Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +3
Query: 549 GXXSPXPRAXXSPXXPPQWGXXXRGPPPXPA-PXPXPXSRPXXXAP 683
G + P +P PP PP PA P P P P AP
Sbjct: 442 GAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 32.7 bits (71), Expect = 0.083
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = -1
Query: 884 GAXGAXPGGLXXGTXGXGXGGGPGXXGXGXVXXRGXPRG 768
G G PGG G G G GGPG G G G P G
Sbjct: 224 GGFGGGPGGFEGGPGGFG--GGPGGFGGGLGGFGGGPGG 260
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/56 (32%), Positives = 18/56 (32%), Gaps = 5/56 (8%)
Frame = -1
Query: 950 GAXAXXGXGXXXXGXRRXXXXXGAXGAXPGGLXXGTXG-----XGXGGGPGXXGXG 798
G G G G G PGG G G G GGGPG G G
Sbjct: 209 GFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.19
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +1
Query: 766 PPLGXPRXXTXPXPXXPGPPPXPXPXV--PWXRPPGXAPXAP 885
PP+ P P P G PP P P V P P AP P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Score = 31.5 bits (68), Expect = 0.19
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +1
Query: 766 PPLGXPRXXTXPXPXXPGPPPXPXP--XVPWXRPPGXAPXAP 885
PP+ P P P PP P P VP PP AP P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 31.1 bits (67), Expect = 0.25
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +1
Query: 766 PPLGXPRXXTXPXPXXPGPPPXPXPXV--PWXRPPGXAPXAP 885
PP+ P P P G PP P P V P P AP P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143
Score = 30.7 bits (66), Expect = 0.33
Identities = 23/103 (22%), Positives = 27/103 (26%), Gaps = 1/103 (0%)
Frame = +3
Query: 534 RPXTXGXXSPXPRAXXSPXXPPQWGXXXRGPPPXPAPXPXPXSRPXXXAPXVTSXXTXXX 713
+P P P + P P G PP P P P P T+
Sbjct: 1163 KPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Query: 714 XXXXXXXAXPXXXXPXXP-PPRXPPXXDPPRAXXXRPXSXPXP 839
P P P P P PR+ P S P
Sbjct: 1223 SAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASP 1265
Score = 30.3 bits (65), Expect = 0.44
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +1
Query: 766 PPLGXPRXXTXPXPXXPGPPPXPXPXVPWXRPPGXAP 876
PP+ P P P G PP P P V PP AP
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSV--AAPPVPAP 1174
Score = 29.9 bits (64), Expect = 0.58
Identities = 22/81 (27%), Positives = 24/81 (29%), Gaps = 1/81 (1%)
Frame = +3
Query: 561 PXPRAXXSPXXPPQWGXXXRGPPPXPAPXPXPXSRP-XXXAPXVTSXXTXXXXXXXXXXA 737
P P +P P PPP PAP S P AP V + A
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAA 1101
Query: 738 XPXXXXPXXPPPRXPPXXDPP 800
P PP P PP
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPP 1122
Score = 29.9 bits (64), Expect = 0.58
Identities = 18/80 (22%), Positives = 19/80 (23%)
Frame = +3
Query: 561 PXPRAXXSPXXPPQWGXXXRGPPPXPAPXPXPXSRPXXXAPXVTSXXTXXXXXXXXXXAX 740
P P P P P P P P P P V +
Sbjct: 1124 PKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK 1183
Query: 741 PXXXXPXXPPPRXPPXXDPP 800
P P PPP P P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKP 1203
Score = 27.5 bits (58), Expect = 3.1
Identities = 23/102 (22%), Positives = 24/102 (23%)
Frame = +3
Query: 495 PXXXPRRPGTXRXRPXTXGXXSPXPRAXXSPXXPPQWGXXXRGPPPXPAPXPXPXSRPXX 674
P P P P P S PP P P P+ P P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Query: 675 XAPXVTSXXTXXXXXXXXXXAXPXXXXPXXPPPRXPPXXDPP 800
P V A P PP PP PP
Sbjct: 1177 GIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 27.1 bits (57), Expect = 4.1
Identities = 33/133 (24%), Positives = 37/133 (27%)
Frame = +2
Query: 437 TXPPPXRGPPXXXGXKXFRAXXXPPXPRYXPXTAXHXGXXXAXAPRPXXPXPPPPVGXXX 616
T PP PP K P R P P P PP PV
Sbjct: 983 TSEPPKDHPPSAPLSKPVSTSPAAPLARVPP--VPKLSSKAPPVPLPSADAPPIPV---P 1037
Query: 617 AGAXPXSRPXPXTXVPPFXXGXAGHIXXNXXXXXXLXXXXXXAXXXPGGXPPSXPPXSRP 796
+ A P P P T PP +G + + P G PP P P
Sbjct: 1038 STAPPV--PIP-TSTPPVPKSSSG--APSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIP 1092
Query: 797 XPXXPXPAXLPXP 835
P A P P
Sbjct: 1093 PVPKPSVAAPPVP 1105
Score = 26.6 bits (56), Expect = 5.4
Identities = 22/104 (21%), Positives = 25/104 (24%)
Frame = +3
Query: 489 SGPXXXPRRPGTXRXRPXTXGXXSPXPRAXXSPXXPPQWGXXXRGPPPXPAPXPXPXSRP 668
S P G P S P PP P P P+ P +P
Sbjct: 1048 STPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKP 1107
Query: 669 XXXAPXVTSXXTXXXXXXXXXXAXPXXXXPXXPPPRXPPXXDPP 800
P V + A P PP P PP
Sbjct: 1108 SVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = +1
Query: 766 PPLGXPRXXTXPXPXXPGPPPXPXP--XVPWXRPPGXAPXAP 885
PP+ P P P PP P P P + AP AP
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAP 1063
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Frame = +1
Query: 766 PPLGXPRXXTXPXPXXPGPPPXPXP--XVPWXRPPGXAPXAP 885
PP+ P P G PP P P P +P AP P
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVP 1105
Score = 25.8 bits (54), Expect = 9.5
Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Frame = +1
Query: 766 PPLGXPRXXTXPXPXXPGPPPXPXPXV---PWXRPPGXAPXAP 885
PP+ P P P PP P P P P AP P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.1 bits (67), Expect = 0.25
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +1
Query: 766 PPLGXPRXXTXPXPXXPGPPPXPX--PXVPWXRPPGXAPXAP 885
PP P + P P PP P P +P PP P AP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180
Score = 29.9 bits (64), Expect = 0.58
Identities = 22/92 (23%), Positives = 26/92 (28%)
Frame = +2
Query: 368 SPPPXIXXNXXXXRTXXPPPLXXTXPPPXRGPPXXXGXKXFRAXXXPPXPRYXPXTAXHX 547
+P P + T PP P P PP + PP P +
Sbjct: 127 APAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS 186
Query: 548 GXXXAXAPRPXXPXPPPPVGXXXAGAXPXSRP 643
A P P PPP A SRP
Sbjct: 187 APSLPSAVPPMPPKVPPPPLSQAPVANTSSRP 218
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.25
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 561 PXPRAXXSPXXPPQWGXXXRGPPPXPAPXP 650
P P P PP G GPPP P P P
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.9 bits (59), Expect = 2.4
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Frame = +1
Query: 769 PLGXPRXXTXPXPXXPG-PPPXPXPXVPWXRPPGXAPXAP 885
P P P P G PPP P P V PP P P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +2
Query: 767 PPSXPPXSRPXPXXPXPAXLPXPAXXFXGXGPP 865
PP PP P P +P PA G PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764
Score = 26.6 bits (56), Expect = 5.4
Identities = 22/76 (28%), Positives = 23/76 (30%)
Frame = +2
Query: 368 SPPPXIXXNXXXXRTXXPPPLXXTXPPPXRGPPXXXGXKXFRAXXXPPXPRYXPXTAXHX 547
SPPP T P P+ P P G P A PP P P A
Sbjct: 731 SPPPP--PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP-PPPPAVSA 787
Query: 548 GXXXAXAPRPXXPXPP 595
G AP P P
Sbjct: 788 GGSRYYAPAPQAEPEP 803
Score = 26.2 bits (55), Expect = 7.2
Identities = 18/52 (34%), Positives = 18/52 (34%)
Frame = +2
Query: 506 PPXPRYXPXTAXHXGXXXAXAPRPXXPXPPPPVGXXXAGAXPXSRPXPXTXV 661
PP P A AP P PPPP AGA P P P V
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP-PGVAGAGPPPPPPPPPAV 785
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 766 PPLGXPRXXTXPXPXXPGPPPXPXPXVPWXRPP 864
PP+ P + P P GPP P P +P P
Sbjct: 1710 PPMSVPPPPSAP-PMPAGPPSAPPPPLPASSAP 1741
Score = 25.8 bits (54), Expect = 9.5
Identities = 14/48 (29%), Positives = 18/48 (37%)
Frame = +2
Query: 419 PPPLXXTXPPPXRGPPXXXGXKXFRAXXXPPXPRYXPXTAXHXGXXXA 562
PPP + PPP PP G + PP P + + G A
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPP---SAPPPPLPASSAPSVPNPGDRSA 1751
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = -1
Query: 875 GAXPGGLXXGTXGXGXGGGPGXXGXG 798
G PGG G G GG PG G
Sbjct: 612 GGAPGGAPGGMPGGAPGGAPGGADNG 637
Score = 25.8 bits (54), Expect = 9.5
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 884 GAXGAXPGGLXXGTXGXGXGG 822
GA G PGG+ G G GG
Sbjct: 613 GAPGGAPGGMPGGAPGGAPGG 633
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 9.5
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = +3
Query: 582 SPXXPPQWGXXXRGPPPXPAPXPXPXSRP 668
SP PP + P P P P P P P
Sbjct: 220 SPEIPPTYTPKQADPLPAPPPPPPPTLPP 248
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 9.5
Identities = 20/57 (35%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Frame = -1
Query: 650 GXRGGXRGXXXXXXXPLGGXXWAXXGA-GXWRXRXXGGXPXXGXT--GAXGGXGGPG 489
G RGG RG GG GA G R GG G G G GG G
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 9.5
Identities = 12/34 (35%), Positives = 13/34 (38%)
Frame = +3
Query: 549 GXXSPXPRAXXSPXXPPQWGXXXRGPPPXPAPXP 650
G S P + P PP G P PAP P
Sbjct: 1894 GPPSAAPTSALPPAGPPAGATAISGNPGMPAPVP 1927
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 9.5
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = -1
Query: 884 GAXGAXPGGLXXGTXGXGXGGGPGXXGXGXVXXRGXPRGG 765
G G GG + G GG G G G RG RGG
Sbjct: 145 GGRGGSRGGFGGNSRGGFGGGSRGGFGGG---SRGGSRGG 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,694
Number of Sequences: 5004
Number of extensions: 28372
Number of successful extensions: 236
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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