Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_E19
         (995 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.35 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.35
 Identities = 15/49 (30%), Positives = 19/49 (38%)
 Frame = +3

Query: 522 TXRXRPXTXGXXSPXPRAXXSPXXPPQWGXXXRGPPPXPAPXPXPXSRP 668
           T + +  + G   P P    SP  P       RG PP P+  P P   P
Sbjct: 10  TQQSQQPSSGAPGPQPSPHQSPQAPQ------RGSPPNPSQGPPPGGPP 52



 Score = 23.4 bits (48), Expect = 3.2
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +1

Query: 781 PRXXTXPXPXXPGPPPXPXPXVPWXRPPGXAP 876
           P     P     G PP P    P   PPG  P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 12/40 (30%), Positives = 12/40 (30%)
 Frame = +1

Query: 766 PPLGXPRXXTXPXPXXPGPPPXPXPXVPWXRPPGXAPXAP 885
           P  G P     P      P     P      PPG  P AP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 781 PRXXTXPXPXXPGPPPXPXPXVPWXRPPGXAPXAP 885
           P+  + P P   GPPP   P  P  + P     +P
Sbjct: 34  PQRGSPPNPSQ-GPPPGGPPGAPPSQNPSQMMISP 67



 Score = 22.6 bits (46), Expect = 5.7
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +2

Query: 755 PGGXPPSXPPXSRPXPXXPXPA 820
           P G PP  PP   P      PA
Sbjct: 47  PPGGPPGAPPSQNPSQMMISPA 68


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 627 PPXPAPXPXPXS 662
           PP PAP P P S
Sbjct: 338 PPKPAPPPPPPS 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,650
Number of Sequences: 438
Number of extensions: 5325
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33016347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)