Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_E16
         (1068 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.48 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.64 
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    29   1.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +1

Query: 454 PXPPXPPRKXAXPXGXRARPXXPPEXRXPPP 546
           P PP  P     P G  A P  PP    PPP
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 17/42 (40%), Positives = 17/42 (40%), Gaps = 11/42 (26%)
 Frame = +1

Query: 454 PXPPXPPRKXA------XPXGXRARPXXPPE-----XRXPPP 546
           P PP PPR  A       P G  A P  PP       R PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 14/39 (35%), Positives = 15/39 (38%)
 Frame = +1

Query: 439  PXXXXPXPPXPPRKXAXPXGXRARPXXPPEXRXPPPXAP 555
            P      PP  P+  A P      P  PP    PPP AP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAP 1721



 Score = 29.9 bits (64), Expect = 0.64
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = +1

Query: 439  PXXXXPXPPXPPRKXAXPXGXRARPXXPPEXRXPPPXAP 555
            P    P PP PP     P      P  PP    PPP  P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPS--APPPPLP 1736


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 19/55 (34%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
 Frame = -2

Query: 599 GHXXXGXPXRXXXXXGAXGGGXRXSGGXLGRARXPXGXAXFLGGXG-GXGXXXXG 438
           GH   G P R        GGG R   G  G      G   F GG G G G    G
Sbjct: 428 GHFIAGRPCRLDFSTPRTGGGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSG 482


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 21/67 (31%), Positives = 22/67 (32%)
 Frame = +1

Query: 352 LFXRXPXPPXXASXRAXXLXRXEXXQPXKPXXXXPXPPXPPRKXAXPXGXRARPXXPPEX 531
           L  + P PP  A              P  P    P PP PP     P    A P  PP  
Sbjct: 727 LLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP-----PGVAGAGPPPPP-- 779

Query: 532 RXPPPXA 552
             PPP A
Sbjct: 780 --PPPPA 784


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,346,757
Number of Sequences: 5004
Number of extensions: 11057
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 563206452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)