Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_E13
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    28   1.6  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   2.1  
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    27   2.8  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   3.7  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    27   3.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.9  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    26   6.5  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    26   6.5  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   6.5  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    26   6.5  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    26   8.6  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   8.6  

>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +2

Query: 365 DLMHIPVSTP*VKTKEKFNTKLMKRPFPMRMLNQHPYTILEQLKKQHRVISVCIPVSLNP 544
           ++ HI   TP  K  E F    +K  F  +ML       LE   + H  +  C+  SLN 
Sbjct: 338 NIFHIGSKTPGAKLVEAFQKMKLKSVFAEKML-------LELKDELHDAVDTCVQASLNE 390

Query: 545 LYI 553
             I
Sbjct: 391 FSI 393


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +1

Query: 130 EELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQ 258
           E L +RAL   S L +  ++A  S+++   G +K  +++N+N+
Sbjct: 824 ENLQSRALELESALEQSVSDAKYSKAIMQSGLSKLLSSINENK 866


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = +1

Query: 343 DDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEEALSNEDVEPAPVYDFRAIEETAPRD 513
           +++D  +  D    E S   D+ +++ + +EE    ED  P PV   +    + P++
Sbjct: 58  EEDDTNYEEDIIDDEESAQVDEEELEEEEEEE----EDATPEPVVTSKKNSRSKPKN 110


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +1

Query: 382 SEHSMSQDQGK---IQHQVDEEALSNEDVEPAPVYDFRAIEETAPRDKCLYSSFFEP 543
           S  S+  +Q K   I ++  E+   N   +   VYDF+   E  P      +++++P
Sbjct: 167 SPPSLDVEQNKPFSISNEPVEQETENSSTKDLQVYDFQTASEHLPEQSLQNTTYYDP 223


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 412 KIQHQVDEEALSNEDVEPAPVYDFRAI 492
           K QH  +++A  N DVE  P+ + ++I
Sbjct: 153 KTQHDENDDASDNSDVEEDPILEHKSI 179


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 921 GFFXXXKPPPPPPXPXXKKK 862
           GF    +PPPPPP    KK+
Sbjct: 17  GFEPPSQPPPPPPPGYVKKR 36


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 379 SSEHSMSQDQGKIQHQVDEE 438
           S EH+ S D G  QH +D+E
Sbjct: 46  SKEHNSSPDDGPWQHDLDQE 65


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -3

Query: 382 WNMHQVAILGHYHLELKEYHLEWFSLIIDNRPHQN-EHWF*GSDSYLRLSFFLHCHHSQQ 206
           W M       +  +E  +  LE+F LI ++ P QN   W+     YL L  + H     +
Sbjct: 431 WGMLYDIAKAYMDIERLDLALEYFVLICNHEPAQNIGLWYNMGVCYLELKEYEHAQQCME 490


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 340 QDDNDQGWRPDAYSSEHSMSQDQGKIQHQVDEEALSNED 456
           QD+    +    YSSE S S+D+ K +       +SN+D
Sbjct: 617 QDEPSYKFHKYEYSSEESGSEDEFKSEKDTKGYVISNDD 655


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = -3

Query: 328 YHLEWFSLIIDNRPHQNEHWF*GSDSYLRLSFFLHCHHSQQIDWIEHLWSYVLKYYE 158
           Y L+  S I D R +     F G++ Y+       C H+  +DW    W+  + +YE
Sbjct: 366 YALDTKSCIADFRTNS----FVGTEEYIAPEVIKGCGHTSAVDW----WTLGILFYE 414


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -1

Query: 534 ETGIQTLITRCCFFNCSKIVY-GCWFNILIGKGLFINLVLNFSLVLTHGV 388
           E+ I TLIT CC      I++   +F+I +   L    ++NF L L H V
Sbjct: 794 ESCIDTLITNCCAMQSFSIMHLPKFFSITMSSNLSERSLVNF-LRLLHVV 842


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 163  STLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKT 270
            STL    +++  S S+G G S    + +  N++P T
Sbjct: 3649 STLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPST 3684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,665
Number of Sequences: 5004
Number of extensions: 47991
Number of successful extensions: 214
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)