Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_E13
         (921 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   2.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   9.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 903  KPPPPPPXP 877
            +PPPPPP P
Sbjct: 1354 QPPPPPPPP 1362



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 466 LVQHPHWKGPLHQLGVEFFLGLDSWS 389
           LV  P W+  L+   VE  LG + WS
Sbjct: 902 LVTFPVWQVTLNARLVELSLGSNPWS 927


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = -3

Query: 370 QVAILGHYHLELKEYHLEWFSLIIDNRPHQNE 275
           Q  +  H+HL+   +HL+  ++   +RP+Q +
Sbjct: 135 QETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQ 166


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 903 KPPPPPPXP 877
           KP PPPP P
Sbjct: 340 KPAPPPPPP 348


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -3

Query: 346 HLELKEYHLEWFSLIIDNRPH 284
           +LE+K Y+++W   I+ +  +
Sbjct: 101 NLEIKNYNIDWDKCILSSESY 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,876
Number of Sequences: 438
Number of extensions: 3599
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)