Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_E12
         (1102 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0904 + 20717005-20718087                                         31   1.2  
12_02_1174 - 26696869-26698191                                         30   2.8  
01_01_0070 - 542603-542686,542803-543441                               30   2.8  

>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 24/78 (30%), Positives = 26/78 (33%)
 Frame = -3

Query: 596 YGGXXHXXXTPGXVXPIXXHXIXPSXRPXXRPXINXPXRXKXPNXHXPPXQRPPGXLXXP 417
           YGG      TP  V P       P       P  + P   K P  H PP   PP     P
Sbjct: 27  YGGGYTPTPTP--VKPAPKPEKPPKEHKP--PHHHEPKPEKPPKEHKPPAYTPPKPTPTP 82

Query: 416 XXQTAXPXKXLPPRSXPR 363
              T  P K  PP   P+
Sbjct: 83  PTYTPTP-KPTPPPYTPK 99


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
 Frame = -3

Query: 527 PSXRPXX-RPXINXPXRXKXPNXHXPPXQRPPGXLXXPXXQTAXPXKXLPPRSXP 366
           PS +P   +P    P   + P+   PP  RPP            P   LPP S P
Sbjct: 168 PSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPP 222


>01_01_0070 - 542603-542686,542803-543441
          Length = 240

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 25/97 (25%), Positives = 29/97 (29%)
 Frame = -3

Query: 656 PXCPXXTPAPGGSXXXXPXXYGGXXHXXXTPGXVXPIXXHXIXPSXRPXXRPXINXPXRX 477
           P  P  TP P       P           TP  V P     + P+  P   P    P + 
Sbjct: 33  PAQPTPTPVPTAPAKSPPAPATPAPTATPTP-PVAPAKAPPVAPAVAPVTPPPPT-PKKA 90

Query: 476 KXPNXHXPPXQRPPGXLXXPXXQTAXPXKXLPPRSXP 366
             P    PP   PP          A P   LPP + P
Sbjct: 91  PPPPVTPPPVTPPPVTPPPVSPPPATPPPALPPSTPP 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,831,679
Number of Sequences: 37544
Number of extensions: 200065
Number of successful extensions: 796
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3304646468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)