Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_E06
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...   142   6e-35
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    29   0.91 
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      28   1.6  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    28   2.1  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   4.8  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    26   8.5  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   8.5  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   8.5  

>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score =  142 bits (344), Expect = 6e-35
 Identities = 65/175 (37%), Positives = 106/175 (60%), Gaps = 7/175 (4%)
 Frame = +1

Query: 250 PHVPPSAEKRPWKIV-------WRNVILFFILHVGGVYGGYLFLFKAMWRTSIFAIFLYL 408
           P  P   +++PW +        W + +L F L +  +YG  +F      +T IFAI  Y 
Sbjct: 42  PKAPKHIQEQPWTMQNWWRHLNWLHCMLIFGLPMIAIYG--VFTTPLQTKTLIFAIIYYA 99

Query: 409 CSGLGITAGAHRLWAHKSYKARLPLRILLTIFNTIAFQDAVVDWARDHRMHHKYSETDAD 588
            SGLGITAG HRLW+H++YKA+ PL   L      AF+ ++  W+RDHR HH+Y++TD D
Sbjct: 100 YSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRYTDTDKD 159

Query: 589 PHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLHNDPILRFQKKYYQNFNAF 753
           P+N  +GF+++H+GW+++ ++P    +    DV+DL++DP + F  +++    +F
Sbjct: 160 PYNVKKGFWYAHVGWMIILQNPRRIGRS---DVSDLNSDPFVMFNHRHFLPIASF 211


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 252  PCTSLSREETMEDCVEKRDSVLYSACRWC 338
            PC ++S+  T  +   K+ S+L+  CR C
Sbjct: 1407 PCATISKAVTQHNAYNKKLSLLFDICRGC 1435


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +1

Query: 571 SETDADPHNATRGFFFSHIGWLLLRKHPEIKAKGHTVDVNDLHNDPILRFQKKYYQNFNA 750
           S T  D H+    +  S++G    RK P  K +G+    ++   D IL  +KK  Q+ + 
Sbjct: 11  SSTVGDVHDVFFEYDVSNVG----RKRPRTKEEGYYESESEEDEDQILNKEKKEGQSEDM 66

Query: 751 FS 756
           FS
Sbjct: 67  FS 68


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
 Frame = +1

Query: 538 WARDHRMHHKYSETDADPHNATRGFFFS-HIGWLLLRKHPEIKAKGHTVDVNDLHNDPIL 714
           W RD  +  +  + D    +   GF F+ H+   L ++HP+ + K   +D N L +  + 
Sbjct: 44  WVRDKLLRIESHDIDV-AIDCMSGFEFAQHLQSYLAQQHPDWETKVIKIDANPLKSKHLE 102

Query: 715 RFQKKYY-QNFNAFSLLHHAYICTN 786
               +    + +  +L HH Y  +N
Sbjct: 103 TATARIMGMDIDIVNLRHHDYTNSN 127


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 126 CKQQCLKNTLLIITSSKATSSVFEVPKS 43
           C+  CL    LI+ SSK    ++E+ K+
Sbjct: 107 CQNMCLYGDELIVLSSKKNLEIYEIQKN 134


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 327 CRWCLWRIPVPFQSHVEDFYIRH 395
           CR CL  I  P +S +E++ ++H
Sbjct: 105 CRVCLTNIGQPERSRIENYVLKH 127


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 409 TSTKIWRI*KSSTWL*KGTGILHKHHRHA 323
           T+T +WR    ++ L    G+  KH +HA
Sbjct: 18  TTTSLWRRGPDNSLLCNACGLYQKHRKHA 46


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 330 RWCLWRIPVPFQSHVEDFY 386
           RWCL   P+  Q+H+++FY
Sbjct: 421 RWCLSGTPI--QNHIDEFY 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,152,434
Number of Sequences: 5004
Number of extensions: 97922
Number of successful extensions: 310
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)