Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_E03
         (939 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    62   1e-10
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    50   6e-07
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    48   3e-06
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    48   3e-06
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    42   2e-04
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    29   0.95 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    29   1.2  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    27   3.8  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    27   5.0  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    26   8.8  

>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 33/79 (41%), Positives = 41/79 (51%)
 Frame = +2

Query: 461 RFSRLERYATETNKLLIRLDKLICNMPSDPHQRKIHEQDAVPWLDGSSVNLCPNCAKPFH 640
           R  +LE   T  N  +  LD L+ N      + K  EQ  V W D S V +CP C   F 
Sbjct: 238 RMKKLEELWTSENVSM--LDALLLN------KAKRLEQSIVHWQDDSVVQICPECNNSFT 289

Query: 641 LTRRQHHCRLCGSILCHDC 697
           LTRR+ HCRLCG ++C  C
Sbjct: 290 LTRRRRHCRLCGRVICRFC 308



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 617 PNCAKPFHLTRRQHHCRLCGSILCHDCSVF 706
           P C K  +      HCR CG I C+  S++
Sbjct: 143 PMCDKLLNFINGHIHCRKCGYIFCNFHSMY 172


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 49.6 bits (113), Expect = 6e-07
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 554 QRKIHEQDAVPW-LDGSSVNLCPNCAKPFHLTRRQHHCRLCGSILCHDC 697
           +R + E  A  W LD  S   C NC  PF   RR+HHCR CG + C++C
Sbjct: 13  RRLLIETPAAIWQLDDESAQ-CNNCGGPFTWFRRRHHCRWCGKLFCYNC 60


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = +2

Query: 587 WLDGSSVNLCPNCAKPFHLTRRQHHCRLCGSILCHDC 697
           W+     N C  C   F L RR+HHCR+CG I+C  C
Sbjct: 57  WMKDERTNNCSLCETEFTLFRRKHHCRICGKIICKYC 93


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = +2

Query: 539 PSDPHQRKIHEQDAVPWLDGSSVNLCPNCAKPFHLTRRQHHCRLCGSILCHDCS 700
           PS     K  + +  P  D +   +C  C  PF  T R+HHCR CG + C+ CS
Sbjct: 153 PSQNITSKFLDTETPP--DWTDSEVCLRCRTPFTFTNRKHHCRNCGGVFCNQCS 204


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 587 WLDGSSVNLC--PNCAKPFHLTRRQHHCRLCGSILC 688
           W   S V++C  P+C+  F L  R+HHCR CG I C
Sbjct: 151 WKPDSDVSVCSFPSCSVRFGLFDRRHHCRRCGDIFC 186


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 191 EGFLCPICKADLKSASQLTNHFESLHQEDQ 280
           + F+CP C    K +  L  H  SLH  ++
Sbjct: 421 KSFVCPECSKKFKRSEHLRRHIRSLHTSEK 450


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +2

Query: 611  LCPNCAKPFHLTRRQHHCRLCG-SILCHDC 697
            LC  C   F L   +  CR CG S +C DC
Sbjct: 2555 LCSLCDSRFSLMEWRSQCRACGNSNVCSDC 2584


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = +2

Query: 167 TANDDEILEG-------FLCPICKADLKSASQLTNHFESLHQEDQDVLKSLKDIFGKAKT 325
           T++DDE L          +C +C  + +S +QL NH E+  +  +++ K  ++I   AK 
Sbjct: 253 TSSDDESLSKEIVNSNPIMCMVCNKNFRSQNQLENH-ENSKKHKKNLRKMNQEIKKHAKE 311

Query: 326 IILNNEN 346
              N E+
Sbjct: 312 AQKNAES 318


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 311 GKAKTIILNNENADLKETFARALKFNYQDYYDEEQVIGVSRSSTDYFKGVRF 466
           G+  T+I ++ N D     + A+     D YD E+ I + R   +Y+K +++
Sbjct: 53  GRVPTLI-DHHNNDYTIWESDAILIYLADKYDTERKISLPRDHPEYYKVIQY 103


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = +2

Query: 203 CPICKADLKSASQLTNHFESLHQEDQDVLKSLKDI 307
           CP C+   K    L  H +  H +   + +  KD+
Sbjct: 61  CPYCEIKCKRKDLLKRHIQRFHNDKSVIEEGSKDV 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,613
Number of Sequences: 5004
Number of extensions: 48987
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)