Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_E02
(915 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical pr... 151 9e-37
AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical... 113 1e-25
AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical... 113 1e-25
AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical... 113 1e-25
U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein. 34 0.12
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 34 0.12
U40413-4|AAM51516.1| 699|Caenorhabditis elegans Hypothetical pr... 33 0.28
U40413-3|AAK39176.1| 673|Caenorhabditis elegans Hypothetical pr... 33 0.28
AL132902-3|CAC14419.1| 271|Caenorhabditis elegans Hypothetical ... 32 0.50
AL132902-2|CAB81987.1| 271|Caenorhabditis elegans Hypothetical ... 32 0.50
AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical ... 32 0.50
U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like prot... 31 0.87
U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family prot... 31 1.1
U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like prot... 31 1.1
Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical pr... 31 1.5
U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein. 31 1.5
Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical pr... 30 2.7
U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical pr... 30 2.7
M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein pro... 30 2.7
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 30 2.7
AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family pr... 30 2.7
U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein. 29 3.5
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis... 29 3.5
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 29 3.5
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 29 3.5
U40411-2|AAR25660.2| 413|Caenorhabditis elegans Hypothetical pr... 29 6.1
AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family pr... 29 6.1
U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein. 28 8.1
U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical p... 28 8.1
AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical ... 28 8.1
>Z82077-8|CAB63329.1| 459|Caenorhabditis elegans Hypothetical
protein W09C5.2 protein.
Length = 459
Score = 151 bits (365), Expect = 9e-37
Identities = 78/190 (41%), Positives = 113/190 (59%), Gaps = 2/190 (1%)
Frame = +1
Query: 202 SNETNKTFSNLETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTD 381
++E+ +T + E P Y GFAN PNQV R++VK GF+FTLMVVG SGLGKST +N+LFL +
Sbjct: 12 NDESLRTGQHKENPNYWGFANFPNQVFRRAVKNGFDFTLMVVGRSGLGKSTFINTLFLAE 71
Query: 382 LYPERVIPDA-TEKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQ 558
+ A T TV+++ V++ E V L LT+VDTPG+GDA++N+ C+ I+
Sbjct: 72 INNLNEKESAPTHPHPSTVRVEEKLVKLVENSVSLNLTLVDTPGFGDAVNNSKCWEPIVN 131
Query: 559 YIDEQFERFLRDESGLNR-RNIVDNRIHCCFYFISPVWTRGXXXXXXXXXNSCTTKLTSY 735
Y++ +F +E+ ++R IVD +H C YFI P G ++
Sbjct: 132 YVESKFFEQFCEETRIDRGEKIVDKCVHLCLYFIEPS-GHGLKPIDIELMKHLHGRVNIV 190
Query: 736 RXIAKADCLT 765
I+KADCLT
Sbjct: 191 PVISKADCLT 200
>AL117200-14|CAJ85779.1| 465|Caenorhabditis elegans Hypothetical
protein Y50E8A.4c protein.
Length = 465
Score = 113 bits (273), Expect = 1e-25
Identities = 60/146 (41%), Positives = 94/146 (64%), Gaps = 2/146 (1%)
Frame = +1
Query: 232 LETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDA 411
++ G+VGF +LP+Q+ +K+V+ GF+F LM VGE+G GK+TL+ SLF L E P
Sbjct: 74 MQLNGHVGFDSLPHQLVKKAVEAGFQFNLMCVGETGTGKTTLIESLFNMKLDFE---PCN 130
Query: 412 TEKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLR 591
E +TV+L T ++ E G++++L +V+T G+GD +D + I+ Y++ QFE +L+
Sbjct: 131 HEL--KTVELRTCTKDVAEGGIRVKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETYLQ 188
Query: 592 DESGLNR--RNIVDNRIHCCFYFISP 663
+E R + D+RIH C YFISP
Sbjct: 189 EELKPRRMLQYFNDSRIHACLYFISP 214
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +3
Query: 681 KPLDIEFLKQLHNKVNIVPXYRQSGLSHLRKXFXRLKSRVMEXIEXXGXXIYPLP 845
K LD+ L++L +VN++P +S + + R K++++ ++ IY P
Sbjct: 220 KALDLVTLRELAKRVNVIPVIAKSDTT-CKDELLRFKAKILSELKSQKIDIYTFP 273
>AL117200-12|CAB60583.1| 461|Caenorhabditis elegans Hypothetical
protein Y50E8A.4b protein.
Length = 461
Score = 113 bits (273), Expect = 1e-25
Identities = 60/146 (41%), Positives = 94/146 (64%), Gaps = 2/146 (1%)
Frame = +1
Query: 232 LETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDA 411
++ G+VGF +LP+Q+ +K+V+ GF+F LM VGE+G GK+TL+ SLF L E P
Sbjct: 74 MQLNGHVGFDSLPHQLVKKAVEAGFQFNLMCVGETGTGKTTLIESLFNMKLDFE---PCN 130
Query: 412 TEKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLR 591
E +TV+L T ++ E G++++L +V+T G+GD +D + I+ Y++ QFE +L+
Sbjct: 131 HEL--KTVELRTCTKDVAEGGIRVKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETYLQ 188
Query: 592 DESGLNR--RNIVDNRIHCCFYFISP 663
+E R + D+RIH C YFISP
Sbjct: 189 EELKPRRMLQYFNDSRIHACLYFISP 214
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +3
Query: 681 KPLDIEFLKQLHNKVNIVPXYRQSGLSHLRKXFXRLKSRVMEXIEXXGXXIYPLP 845
K LD+ L++L +VN++P +S + + R K++++ ++ IY P
Sbjct: 220 KALDLVTLRELAKRVNVIPVIAKSDTT-CKDELLRFKAKILSELKSQKIDIYTFP 273
>AL117200-11|CAD54172.1| 530|Caenorhabditis elegans Hypothetical
protein Y50E8A.4a protein.
Length = 530
Score = 113 bits (273), Expect = 1e-25
Identities = 60/146 (41%), Positives = 94/146 (64%), Gaps = 2/146 (1%)
Frame = +1
Query: 232 LETPGYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDA 411
++ G+VGF +LP+Q+ +K+V+ GF+F LM VGE+G GK+TL+ SLF L E P
Sbjct: 143 MQLNGHVGFDSLPHQLVKKAVEAGFQFNLMCVGETGTGKTTLIESLFNMKLDFE---PCN 199
Query: 412 TEKTNQTVKLDASTVEIEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLR 591
E +TV+L T ++ E G++++L +V+T G+GD +D + I+ Y++ QFE +L+
Sbjct: 200 HEL--KTVELRTCTKDVAEGGIRVKLRLVETAGFGDQLDKDKSAKVIVDYLESQFETYLQ 257
Query: 592 DESGLNR--RNIVDNRIHCCFYFISP 663
+E R + D+RIH C YFISP
Sbjct: 258 EELKPRRMLQYFNDSRIHACLYFISP 283
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +3
Query: 681 KPLDIEFLKQLHNKVNIVPXYRQSGLSHLRKXFXRLKSRVMEXIEXXGXXIYPLP 845
K LD+ L++L +VN++P +S + + R K++++ ++ IY P
Sbjct: 289 KALDLVTLRELAKRVNVIPVIAKSDTT-CKDELLRFKAKILSELKSQKIDIYTFP 342
>U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein.
Length = 69
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 310 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 465
F L+++G+SG+GKS L+ F D Y E I + +T++LD T++++
Sbjct: 12 FKLLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 310 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPD-ATEKTNQTVKLDASTVEIE 465
F L+++G+SG+GKS L+ F D Y E I + +T++LD T++++
Sbjct: 12 FKLLLIGDSGVGKSCLL-LRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
>U40413-4|AAM51516.1| 699|Caenorhabditis elegans Hypothetical
protein C18B2.5b protein.
Length = 699
Score = 33.1 bits (72), Expect = 0.28
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Frame = +1
Query: 313 TLMVVGESGLGKSTLVNSL--FLTDLYPE---RVIPDATEKTNQTVKLDASTVEIEERGV 477
TL++ G GK++ + S+ +L D+ E R + D E N T L A +
Sbjct: 468 TLLLFGPVNSGKTSAITSMMNYLYDVKKENDFRFVLD--EHVNATTGLTAYV--FNNTVL 523
Query: 478 KLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQ 573
+TVVDTPG D + N R I Q+ +++
Sbjct: 524 PYNVTVVDTPGVEDKMGNKTVSRLIKQWFEKE 555
>U40413-3|AAK39176.1| 673|Caenorhabditis elegans Hypothetical
protein C18B2.5a protein.
Length = 673
Score = 33.1 bits (72), Expect = 0.28
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Frame = +1
Query: 313 TLMVVGESGLGKSTLVNSL--FLTDLYPE---RVIPDATEKTNQTVKLDASTVEIEERGV 477
TL++ G GK++ + S+ +L D+ E R + D E N T L A +
Sbjct: 442 TLLLFGPVNSGKTSAITSMMNYLYDVKKENDFRFVLD--EHVNATTGLTAYV--FNNTVL 497
Query: 478 KLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQ 573
+TVVDTPG D + N R I Q+ +++
Sbjct: 498 PYNVTVVDTPGVEDKMGNKTVSRLIKQWFEKE 529
>AL132902-3|CAC14419.1| 271|Caenorhabditis elegans Hypothetical
protein Y71A12B.3 protein.
Length = 271
Score = 32.3 bits (70), Expect = 0.50
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 116 LNIPNHCLFSHRNYRKFKLNIILKNC*KCQMKQI 217
L++P F R+Y F+ N+I +NC C+ + I
Sbjct: 83 LSLPKAATFESRSYEYFRTNLIRRNCETCKSRTI 116
>AL132902-2|CAB81987.1| 271|Caenorhabditis elegans Hypothetical
protein Y71A12B.2 protein.
Length = 271
Score = 32.3 bits (70), Expect = 0.50
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 116 LNIPNHCLFSHRNYRKFKLNIILKNC*KCQMKQI 217
L++P F R+Y F+ N+I +NC C+ + I
Sbjct: 83 LSLPKAATFESRSYEYFRTNLIRRNCETCKSRTI 116
>AC091125-1|AAK27889.2| 313|Caenorhabditis elegans Hypothetical
protein Y67D2.4 protein.
Length = 313
Score = 32.3 bits (70), Expect = 0.50
Identities = 22/68 (32%), Positives = 38/68 (55%)
Frame = +1
Query: 307 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLR 486
E+ MVVG +GKS+L+N++ L +R +A + TV++ + V I + K
Sbjct: 115 EYQAMVVGIPNVGKSSLINAIRTHTLGIKRKAVEAGARPGVTVRVQ-NRVRILD---KPP 170
Query: 487 LTVVDTPG 510
+ ++DTPG
Sbjct: 171 VYIIDTPG 178
>U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like
protein.
Length = 127
Score = 31.5 bits (68), Expect = 0.87
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Frame = +1
Query: 310 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTV--EIEERGVKL 483
F ++++G+SG+GKS L++ + + E E +++ ++ TV +I + +
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFHLESKSTIGVEFATRSISVEGKTVKAQIWDTAGQE 71
Query: 484 RLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNIV 624
R + + Y A+ + E ER+L++ +NIV
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHVTYENVERWLKELRDHADQNIV 118
>U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family protein
10 protein.
Length = 201
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 310 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKT-NQTVKLDASTVEIEERGVKLR 486
F L+++G+SG+GK+ + LY R DA T T+ +D IE +G K++
Sbjct: 10 FKLLLIGDSGVGKTCI--------LY--RFSDDAFNTTFISTIGIDFKIKTIELKGKKIK 59
Query: 487 LTVVDTPG 510
L + DT G
Sbjct: 60 LQIWDTAG 67
>U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like
protein.
Length = 124
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +1
Query: 310 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKT-NQTVKLDASTVEIEERGVKLR 486
F L+++G+SG+GK+ + LY R DA T T+ +D IE +G K++
Sbjct: 10 FKLLLIGDSGVGKTCI--------LY--RFSDDAFNTTFISTIGIDFKIKTIELKGKKIK 59
Query: 487 LTVVDTPG 510
L + DT G
Sbjct: 60 LQIWDTAG 67
>Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical
protein F26H9.6 protein.
Length = 208
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 307 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 465
+F L+++GES +GKS+LV + + QTV LD +T++ E
Sbjct: 19 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDATIKFE 71
>U68255-1|AAB16970.1| 70|Caenorhabditis elegans rab7-like protein.
Length = 70
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 316 LMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDAST--VEIEERGVKLR 486
++++G+SG+GK++L+N + DL + V + T+ D T V I++R V L+
Sbjct: 12 VIILGDSGVGKTSLMNQYEIGDLMNQYVNRRFMNQYKATIGADFLTRDVNIDDRTVTLQ 70
>Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical
protein ZK792.6 protein.
Length = 184
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 307 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDAST 453
E+ L+VVG+ G+GKS L L + + + E P + + V +D T
Sbjct: 3 EYKLVVVGDGGVGKSALTIQL-IQNHFVEEYDPTIEDSYRKQVVIDGET 50
>U50301-3|AAM29676.1| 370|Caenorhabditis elegans Hypothetical
protein F20D6.8 protein.
Length = 370
Score = 29.9 bits (64), Expect = 2.7
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 316 LMVVGESGLGKSTLVNSL--FLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 489
L + G GK +L N + F T + PERV PD E N K+ +T + R V L +
Sbjct: 174 LRIYGARNCGKKSLANRIHHFATSMAPERVDPD--ENGNDYTKM--TTFLLNGREVTLEI 229
Query: 490 TVVDT 504
+ T
Sbjct: 230 LLEST 234
>M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein
protein.
Length = 187
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 307 EFTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDAST 453
E+ L+VVG+ G+GKS L L + + + E P + + V +D T
Sbjct: 6 EYKLVVVGDGGVGKSALTIQL-IQNHFVEEYDPTIEDSYRKQVVIDGET 53
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +1
Query: 310 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 489
F L+++G+SG+GKS+L+ F + + E I T+ +D ++ G +++L
Sbjct: 11 FKLLIIGDSGVGKSSLL-LRFADNTFSENYI--------TTIGVDFKIRTMDINGQRVKL 61
Query: 490 TVVDTPG 510
+ DT G
Sbjct: 62 QIWDTAG 68
>AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family
protein 11.1 protein.
Length = 211
Score = 29.9 bits (64), Expect = 2.7
Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Frame = +1
Query: 310 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTV--EIEERGVKL 483
F ++++G+SG+GKS L++ + E E +++ ++ TV +I + +
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSISVEGKTVKAQIWDTAGQE 71
Query: 484 RLTVVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRDESGLNRRNIV 624
R + + Y A+ + E ER+L++ +NIV
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHVTYENVERWLKELRDHADQNIV 118
>U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein.
Length = 123
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +1
Query: 310 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 489
F L+++G+SG+GK T V F D + I T+ +D IE G K++L
Sbjct: 9 FKLLLIGDSGVGK-TCVLFRFSDDSFNNSFI--------STIGIDFKIRTIELDGKKIKL 59
Query: 490 TVVDTPG 510
+ DT G
Sbjct: 60 QIWDTAG 66
>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resistance
protein familyprotein 6 protein.
Length = 1396
Score = 29.5 bits (63), Expect = 3.5
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 8/132 (6%)
Frame = +1
Query: 238 TPGYVGFANLPNQVHRKSVKKGFEFTLM------VVGESGLGKSTLVNSLF-LTDLYPER 396
T G + F N+ V K F ++ VVG +G GKSTL+ +F L + R
Sbjct: 1132 TKGEIEFENVSVNYGETKVLKNLSFVVLGGQKIGVVGRTGAGKSTLIKIIFGLKEYCSGR 1191
Query: 397 VIPDATEKTNQTVKLDASTVE-IEERGVKLRLTVVDTPGYGDAIDNTDCFRSIIQYIDEQ 573
V D + + ++ + I + V TV + D D+ + ++ Q +
Sbjct: 1192 VTIDGVDLDHISLNFRRGGMSIIPQEPVIFSGTVRENLDPFDEYDDATIWFALEQC---E 1248
Query: 574 FERFLRDESGLN 609
+R + E GLN
Sbjct: 1249 LKRSITKEKGLN 1260
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +1
Query: 310 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 489
F L+++G+SG+GK T V F D + I T+ +D IE G K++L
Sbjct: 9 FKLLLIGDSGVGK-TCVLFRFSDDSFNNSFI--------STIGIDFKIRTIELDGKKIKL 59
Query: 490 TVVDTPG 510
+ DT G
Sbjct: 60 QIWDTAG 66
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 29.5 bits (63), Expect = 3.5
Identities = 22/67 (32%), Positives = 33/67 (49%)
Frame = +1
Query: 310 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 489
F L+++G+SG+GK T V F D + I T+ +D IE G K++L
Sbjct: 9 FKLLLIGDSGVGK-TCVLFRFSDDSFNNSFI--------STIGIDFKIRTIELDGKKIKL 59
Query: 490 TVVDTPG 510
+ DT G
Sbjct: 60 QIWDTAG 66
>U40411-2|AAR25660.2| 413|Caenorhabditis elegans Hypothetical
protein B0403.5 protein.
Length = 413
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 377 VKNKELTRVDLPSPLSPTTIRVNSKPFFTDFLCT 276
V+ +TR+ S SPTT ++ PFF L T
Sbjct: 334 VQPASVTRISFASTASPTTYSTSTTPFFRPVLTT 367
>AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family
protein 18, isoform b protein.
Length = 203
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 316 LMVVGESGLGKSTLVNSLFLTDLY-PERVIPDATEKTNQTVKLDASTVEI 462
++++GESG+GKS+L+ F+ D++ PE+ + ++ +D + V++
Sbjct: 14 ILIIGESGVGKSSLM-LRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKL 62
>U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein.
Length = 66
Score = 28.3 bits (60), Expect = 8.1
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 310 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIEERGVKLRL 489
F L+++G+SG+GKS+L+ F + + E I T V T++I + VKL++
Sbjct: 11 FKLLIIGDSGVGKSSLL-LRFADNTFSENYI------TTIGVDFKIRTMDINGQRVKLQI 63
>U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical
protein C37C3.3 protein.
Length = 265
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 463 EERGVKLRLT-VVDTPGYGDAIDNTDCFRSIIQYIDEQFERFLRD 594
E+R V + + PG+ +AID D R ++ E ++ L D
Sbjct: 183 EQREVAKEIADAISNPGFNNAIDEADLLRELVDLEQEALDKDLLD 227
>AL032654-6|CAB54465.1| 467|Caenorhabditis elegans Hypothetical
protein Y52B11A.4 protein.
Length = 467
Score = 28.3 bits (60), Expect = 8.1
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 310 FTLMVVGESGLGKSTLVNSLFLTDLYPERVIPDATEKTNQTVKLDASTVEIE 465
+ + VVG++G GKS+L++ L +T Y + D + TV + VE +
Sbjct: 238 YKIYVVGDTGTGKSSLISQL-ITSEY-KNAFADEIQDYENTVSICIGGVECD 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,055,080
Number of Sequences: 27780
Number of extensions: 305137
Number of successful extensions: 1134
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -