Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_E01
         (918 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    30   2.2  
02_05_0686 - 30900748-30902167,30903442-30904742                       30   3.0  
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510...    29   6.8  

>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
 Frame = +2

Query: 641 PXPPXFRLXXPVSPPPRXXXRXXPKPGGXP---RKXLLNQXAXKXPXPKRXVVGXQGPP 808
           P P   R   P  PPPR      P PG  P   R   L+    +   P     G   PP
Sbjct: 26  PKPTPIRNPTPPPPPPRRRTPPPPPPGSGPGPQRPSYLSVALRRRGPPAGSAAGTPAPP 84


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 15/49 (30%), Positives = 17/49 (34%)
 Frame = +2

Query: 584 PPGXGGWXXGPXSVPXXXNPXPPXFRLXXPVSPPPRXXXRXXPKPGGXP 730
           PP  G     P   P    P PP  +   P  PPP+      P   G P
Sbjct: 348 PPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAPGVP 396


>03_02_0027 +
           5100865-5100878,5102241-5102708,5102795-5103021,
           5103670-5104577
          Length = 538

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 20/76 (26%), Positives = 23/76 (30%), Gaps = 1/76 (1%)
 Frame = +2

Query: 584 PPGXGGWXXGPXSVPXXXNPXPPXFRLXXPV-SPPPRXXXRXXPKPGGXPRKXLLNQXAX 760
           PP            P    P PP   +  P   PPP        +P    R   L+Q A 
Sbjct: 188 PPADEDGTSASAGAPPPQAPLPPPAPVPAPAPPPPPAAAPAPAAQPEQRDRDAALDQFAT 247

Query: 761 KXPXPKRXVVGXQGPP 808
             P P    V    PP
Sbjct: 248 PAPAPAPPPVTAPPPP 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,026,491
Number of Sequences: 37544
Number of extensions: 203457
Number of successful extensions: 395
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)