Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D24
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    27   2.7  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    27   3.6  

>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 255 QPVLDCDRRSLCRTWKKESGCXGTNTPYPPVPENIRRKQELFQRDNDLPVFLKG 416
           +PVL   +  LC+ WK+  G     T  P + E I     + Q+  +  V + G
Sbjct: 436 KPVLHV-QEDLCKWWKESKGTTSEATVAPTIQEAIETVMSIKQKSRNTFVCVTG 488


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 384 SGRALVFYEYFRELVDKECSSXGIQI 307
           SG  L+FYE  R++  KEC    I +
Sbjct: 189 SGFQLLFYEKLRQVAQKECGQKDIGV 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,694
Number of Sequences: 5004
Number of extensions: 35795
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)