Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D24
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-7|AAB37730.3|  715|Caenorhabditis elegans Heparan sulphot...    30   2.5  
AB038044-1|BAB62394.1|  852|Caenorhabditis elegans N-deacetylase...    30   2.5  
AB037943-1|BAB61758.1|  696|Caenorhabditis elegans N-deacetylase...    30   2.5  
AB037942-1|BAB61757.1|  814|Caenorhabditis elegans N-deacetylase...    30   2.5  
AB037941-1|BAB61756.1|  826|Caenorhabditis elegans N-deactylase/...    30   2.5  

>U52002-7|AAB37730.3|  715|Caenorhabditis elegans Heparan
           sulphotransferase protein 1 protein.
          Length = 715

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 288 CRTWKKESGCXGTNT--PYPPVPENIRRK-QELFQRDN 392
           CR    ++ C G +    YP +PEN+RRK  ++F  DN
Sbjct: 652 CRLLDGKTKCLGESKGRKYPEMPENLRRKLDKIFSLDN 689


>AB038044-1|BAB62394.1|  852|Caenorhabditis elegans
           N-deacetylase/N-sulfotransferase protein.
          Length = 852

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 288 CRTWKKESGCXGTNT--PYPPVPENIRRK-QELFQRDN 392
           CR    ++ C G +    YP +PEN+RRK  ++F  DN
Sbjct: 789 CRLLDGKTKCLGESKGRKYPEMPENLRRKLDKIFSLDN 826


>AB037943-1|BAB61758.1|  696|Caenorhabditis elegans
           N-deacetylase/N-sulfotransferase protein.
          Length = 696

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 288 CRTWKKESGCXGTNT--PYPPVPENIRRK-QELFQRDN 392
           CR    ++ C G +    YP +PEN+RRK  ++F  DN
Sbjct: 633 CRLLDGKTKCLGESKGRKYPEMPENLRRKLDKIFSLDN 670


>AB037942-1|BAB61757.1|  814|Caenorhabditis elegans
           N-deacetylase/N-sulfotransferase protein.
          Length = 814

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 288 CRTWKKESGCXGTNT--PYPPVPENIRRK-QELFQRDN 392
           CR    ++ C G +    YP +PEN+RRK  ++F  DN
Sbjct: 751 CRLLDGKTKCLGESKGRKYPEMPENLRRKLDKIFSLDN 788


>AB037941-1|BAB61756.1|  826|Caenorhabditis elegans
           N-deactylase/N-sulfotransferase protein.
          Length = 826

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 288 CRTWKKESGCXGTNT--PYPPVPENIRRK-QELFQRDN 392
           CR    ++ C G +    YP +PEN+RRK  ++F  DN
Sbjct: 763 CRLLDGKTKCLGESKGRKYPEMPENLRRKLDKIFSLDN 800


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,391,584
Number of Sequences: 27780
Number of extensions: 206250
Number of successful extensions: 473
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)