Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D23
         (958 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    28   1.7  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    27   3.9  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   5.2  
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar...    26   6.8  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   9.0  

>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 22/61 (36%), Positives = 31/61 (50%)
 Frame = +3

Query: 222 LLERKRRARINRCLDELKDLMVGALEIDDDNLSKLEKADILELTVNHLTKLHSPKDPVLE 401
           L ERKRR  I    D+LKD    AL +D    +K  K  +L   + ++ +L S +   LE
Sbjct: 341 LAERKRRKEIKELFDDLKD----ALPLDKS--TKSSKWGLLTRAIQYIEQLKS-EQVALE 393

Query: 402 A 404
           A
Sbjct: 394 A 394


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 21/94 (22%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
 Frame = +3

Query: 246 RINRCLDELKDLMVGALEIDDDNLSKLEKADILELTVNHLTK-LHSPKDPVLEAKKFQAG 422
           +++  ++E ++ +  ALE    +L +L++ D L   +NHL+K   +P+  ++  K     
Sbjct: 218 QVSLVVEEFEENLKKALESTAKSLPRLDEDDRLLPILNHLSKGFVAPESSIVAPKSGAIT 277

Query: 423 FGQCAAEACRFIMSVPDLDANVSQNL-ISHLSRL 521
            GQ  +    F +    L   + ++  + H  RL
Sbjct: 278 AGQVDSFVSHFPLCAKHLHEVLKRDKHLRHFGRL 311


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 480 ANVSQNLISHLSRLITAQPLTIQVPERATF 569
           A VSQ L + +S    A+ L   VP RA F
Sbjct: 49  AKVSQKLFADISTATAAEKLQFTVPRRARF 78


>SPAC1071.09c |||DNAJ domain protein, DNAJC9
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 189 KTAKYKKITKPLLERKRRAR-INRCLDELKDLMVGALEID-DDNLSKLEKA 335
           K +KYK+      +RKRRA+   R   E ++L   ++E+  D+NL K  KA
Sbjct: 187 KISKYKRFAPNEKKRKRRAKAAEREAQEAEEL---SMELGLDENLKKRRKA 234


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 23/88 (26%), Positives = 38/88 (43%)
 Frame = +3

Query: 267 ELKDLMVGALEIDDDNLSKLEKADILELTVNHLTKLHSPKDPVLEAKKFQAGFGQCAAEA 446
           +L D +  A  + DD+  +  K D  E+ +NH +  +  KD   E K FQ          
Sbjct: 619 KLSDKIDDANSLKDDDFIQGSKKDFFEMNLNHSS--YQNKD---ELKPFQLLVKHAFKPP 673

Query: 447 CRFIMSVPDLDANVSQNLISHLSRLITA 530
              ++  P  D   S  L S +S+ I++
Sbjct: 674 SYRLIRPPLRDWQSSDTLSSEMSKSISS 701


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,368
Number of Sequences: 5004
Number of extensions: 48196
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)