Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_D23
(958 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 33 0.44
09_04_0432 + 17510820-17510996,17511076-17511546 31 1.0
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 31 1.4
06_03_0896 + 25753377-25754325,25755081-25755691 30 2.4
02_05_0305 + 27727991-27728473,27730785-27731237 30 3.1
12_02_0486 + 19577507-19577568,19578119-19578218,19581128-195812... 29 5.5
11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338 29 5.5
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 29 5.5
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 29 5.5
08_02_1515 + 27637966-27638679 29 7.2
05_02_0052 + 6124880-6124956,6125097-6125250,6125327-6125920,612... 29 7.2
03_02_0436 + 8427018-8427707,8429005-8429544 29 7.2
06_03_0897 + 25762154-25763056,25764189-25764800 28 9.6
02_05_1137 - 34372803-34372869,34373088-34373229,34373334-343734... 28 9.6
01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008 28 9.6
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 32.7 bits (71), Expect = 0.44
Identities = 21/54 (38%), Positives = 29/54 (53%)
Frame = -1
Query: 283 IRSLSSSKHRLMRARRFRSSNGLVIFLYLAVFDKRSRVRHLLVMNYKHLNELRT 122
I+ S S+H + A S+ VIFL ++FDK S +R L N K +E RT
Sbjct: 430 IKMESDSRHGKLAAA-LESTKSEVIFLKASLFDKDSELRRALDANEKLQSETRT 482
>09_04_0432 + 17510820-17510996,17511076-17511546
Length = 215
Score = 31.5 bits (68), Expect = 1.0
Identities = 21/51 (41%), Positives = 29/51 (56%)
Frame = +3
Query: 228 ERKRRARINRCLDELKDLMVGALEIDDDNLSKLEKADILELTVNHLTKLHS 380
ERKRR RIN LD L+ L+ A S+++KA +L V ++ KL S
Sbjct: 36 ERKRRERINAHLDTLRGLVPSA--------SRMDKAALLGEVVRYVRKLRS 78
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 31.1 bits (67), Expect = 1.4
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +3
Query: 168 RTRLRLSKTAKYKKITKPLLERKRRARINRCLDELKDLMVGALEIDDDNLSKLEKADILE 347
R+ R SK ++ ++ L ER+RR RIN + L++L+ N +K++KA +LE
Sbjct: 325 RSAARSSKRSRTAEVHN-LSERRRRDRINEKMRALQELI--------PNCNKIDKASMLE 375
Query: 348 LTVNHLTKL 374
+ +L L
Sbjct: 376 EAIEYLKTL 384
>06_03_0896 + 25753377-25754325,25755081-25755691
Length = 519
Score = 30.3 bits (65), Expect = 2.4
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = +3
Query: 249 INRCLDELKDLMVGALEIDDDNLSKLEKADILELTVNHLTKLHSPKDPVL 398
+ + DE++ + +G ++ ++NLS L + L + +LH P+ P+L
Sbjct: 372 MQKAQDEVQRVFIGQHKVTEENLSNL---SYMYLVIKEALRLHPPRPPLL 418
>02_05_0305 + 27727991-27728473,27730785-27731237
Length = 311
Score = 29.9 bits (64), Expect = 3.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -3
Query: 119 LVIHPHASRHYTCTSQRVSFAXLLNLKDSLV 27
+++ P ++ CT + F LL++KDSLV
Sbjct: 268 VIVAPRSNNELDCTKLKAEFPELLSIKDSLV 298
>12_02_0486 +
19577507-19577568,19578119-19578218,19581128-19581214,
19581852-19581914
Length = 103
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +1
Query: 133 HLSVYNSLPKDVGPGS-VCR 189
H +V+NS PK+ GPGS VCR
Sbjct: 3 HSNVWNSHPKNYGPGSRVCR 22
>11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338
Length = 56
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +1
Query: 133 HLSVYNSLPKDVGPGS-VCR 189
H +V+NS PK+ GPGS VCR
Sbjct: 3 HSNVWNSHPKNYGPGSRVCR 22
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 29.1 bits (62), Expect = 5.5
Identities = 11/41 (26%), Positives = 26/41 (63%)
Frame = +3
Query: 225 LERKRRARINRCLDELKDLMVGALEIDDDNLSKLEKADILE 347
+++KRR+R R + E+++ M ++ DDN+ ++ + +E
Sbjct: 87 VKKKRRSRKKRKVKEMEEKMESKEDVSDDNVEDMQDGNDME 127
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/20 (65%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = +1
Query: 133 HLSVYNSLPKDVGPGS-VCR 189
H +V+NS PK+ GPGS VCR
Sbjct: 3 HSNVWNSHPKNYGPGSRVCR 22
>08_02_1515 + 27637966-27638679
Length = 237
Score = 28.7 bits (61), Expect = 7.2
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 177 LRLSKTAK--YKKITKPLLERKRRARINRCLDELKDLMVGALEIDDDNLSK 323
+RL+K A+ +KK++K K R+ + L E +++ V LE LSK
Sbjct: 127 IRLAKKARKQFKKVSKKTASDKMDCRVVKLLAEAREITVSLLESTSCFLSK 177
>05_02_0052 +
6124880-6124956,6125097-6125250,6125327-6125920,
6126344-6126757,6126835-6126846
Length = 416
Score = 28.7 bits (61), Expect = 7.2
Identities = 18/69 (26%), Positives = 34/69 (49%)
Frame = +3
Query: 222 LLERKRRARINRCLDELKDLMVGALEIDDDNLSKLEKADILELTVNHLTKLHSPKDPVLE 401
L ERKRR ++N L+D++ A + D ++ K D + + + +L + E
Sbjct: 250 LSERKRREKLNDSFKALRDVLPPATKKDKASVLMRAK-DYVNVLKARIAELEEKNRKLSE 308
Query: 402 AKKFQAGFG 428
+++ AG G
Sbjct: 309 SQQLHAGDG 317
>03_02_0436 + 8427018-8427707,8429005-8429544
Length = 409
Score = 28.7 bits (61), Expect = 7.2
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +3
Query: 228 ERKRRARINRCLDELKDLMVGALEIDDDNLSKLEKADILELTVNHLTKLHSPKDPVLE 401
ER+RR RIN L L+ L+ N +K +KA +L + H+ +L + E
Sbjct: 207 ERRRRERINAHLARLRSLL--------PNTTKTDKASLLAEVIQHVKELKRQTSEITE 256
>06_03_0897 + 25762154-25763056,25764189-25764800
Length = 504
Score = 28.3 bits (60), Expect = 9.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 264 DELKDLMVGALEIDDDNLSKLEKADILELTVNHLTKLHSP 383
DE++ L+VG + +++LSKL + L + +LH P
Sbjct: 334 DEVRQLLVGQHRVTEESLSKL---GYMNLVIKETLRLHPP 370
>02_05_1137 -
34372803-34372869,34373088-34373229,34373334-34373403,
34373521-34373823,34374215-34374280,34374425-34374490,
34374584-34374682,34376153-34376310,34376951-34377039,
34377209-34377591
Length = 480
Score = 28.3 bits (60), Expect = 9.6
Identities = 21/73 (28%), Positives = 39/73 (53%)
Frame = +3
Query: 156 TKRCRTRLRLSKTAKYKKITKPLLERKRRARINRCLDELKDLMVGALEIDDDNLSKLEKA 335
T+ R R + S+ A+ ++ E++RR+RIN + L+ L+ N SK +KA
Sbjct: 222 TRPARPRGKRSRAAEVHNLS----EKRRRSRINEKMKALQSLI--------PNSSKTDKA 269
Query: 336 DILELTVNHLTKL 374
+L+ + +L +L
Sbjct: 270 SMLDDAIEYLKQL 282
>01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008
Length = 460
Score = 28.3 bits (60), Expect = 9.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 427 DSVRPKRAAS*CPCRIWTRT 486
D VR + AS CP +WTRT
Sbjct: 213 DGVRDETGASACPWAVWTRT 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,353,466
Number of Sequences: 37544
Number of extensions: 363513
Number of successful extensions: 983
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2764678640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -