Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D23
         (958 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           27   0.84 
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    26   1.9  

>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 27.1 bits (57), Expect = 0.84
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = +3

Query: 183  LSKTAKYKKITKPLLERKRRARINRCLDELKDLMVGALEIDDDNLSKLEKADILELTVN 359
            + + A YK++   L+++KR+ +  R LDEL+      L +D  + S    +DIL+   N
Sbjct: 1032 MRRDAPYKRLV--LVDKKRQKKYKRNLDELR--QATRLRVDAKSKSLDSCSDILQEVPN 1086


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
 Frame = +3

Query: 156  TKRCRTRLRLSKTAKYKKITKPLLERKR-RARINRCLDELKDLMVGALEIDDDNLSKLEK 332
            T   R RL  +   K + + + L  + R R  + R    L+DL     +I     S L K
Sbjct: 918  TTEKRIRLVSATQDKLEDVVEELEGKNRERDELIRYSTALRDLTQMMRDIRKSRFSHLHK 977

Query: 333  ADILELTVNHLTKLHSPKDPVLEAKKFQAGFGQCAAEACRFIMSVPDLDANVSQNLIS 506
                 LT +   ++      +++ + +  G  +   E CR  +SV   DANV QN +S
Sbjct: 978  -----LTTHMALRVKHKFTNIMQIRNY-LGKLRVNQEECRLSLSVVPRDANV-QNAVS 1028


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,096
Number of Sequences: 2352
Number of extensions: 12578
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 105016554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)