Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D20
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    34   0.032
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    30   0.40 
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    28   1.6  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    27   4.9  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    26   6.5  
SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   6.5  
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce...    26   6.5  

>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 326 SSRKYSPITRVMDIFRSKPHSENNQTPADAAKKKNSKEVRRSSI-GTTSPTYHKNSYASL 502
           S++ Y P + V  +   KP      +  DAAK++  + +R+  I  T S T   N+YAS 
Sbjct: 425 STQYYQPSSPVQPVQNVKPAQPAQPSLEDAAKRRVEEMLRQMDITPTASSTTANNAYASA 484

Query: 503 DP 508
           +P
Sbjct: 485 EP 486


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 522  NYFEKLEGFLSMIHIYRLYKYLSEVETKQDFC*IFSNI--INVTRCYLNQQSYNF*YPI 692
            NY   +E    +  I+RLY   + ++  ++ C I +N+  +NV    +N  ++N  YP+
Sbjct: 901  NYISDIESLKPLQMIHRLYLVGNRIKKMRNLCDILANLKQLNVLDLRMNPLNFNI-YPV 958


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 233 TENQEISKDDQNL--VDTNKDSHKKYYHTVTGASSRKYSPITRVMDIFRSKPH 385
           TEN  I   +Q +  +D    S   + HTV+ ASS+K    T + D    K H
Sbjct: 140 TENPTIPNSEQTVDTLDAASSSAPNFTHTVSSASSQKQGS-TSLTDTENQKAH 191


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -1

Query: 789 RNHTXRVVSYLHPIMXRXYPRVILKXXMSYGHKLGIKNYNFADLGNI 649
           +N    ++S +HP+M   +   +++    +G    I+    A LGN+
Sbjct: 392 QNIVDSIISQIHPLMLNRFGNFLVQRCFEHGTAPQIRQMGSAMLGNM 438


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 473 TYHKNSYASLDPVQAKQLFREVRGLPKYDPYL 568
           T H  S  S +PV+  + + E   +P  D YL
Sbjct: 384 TKHSTSLPSTEPVEVDKQYMESEKIPTIDEYL 415


>SPCC132.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 336 NIVL*LG*WTFSEVNRILKIIKLLQMQRKRKIPKKFDV 449
           N +L +G W+ SE     K+++LL   +KR+  +K ++
Sbjct: 112 NTLLKMG-WSISEKKMKKKLLELLAKNKKRRTMRKLEI 148


>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/79 (21%), Positives = 33/79 (41%)
 Frame = +2

Query: 326 SSRKYSPITRVMDIFRSKPHSENNQTPADAAKKKNSKEVRRSSIGTTSPTYHKNSYASLD 505
           S   Y  +  V    RS+PHS          +++NS++   ++       Y +N+Y   D
Sbjct: 164 SQEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSRDFPSNN---KDGGYRRNNYRDRD 220

Query: 506 PVQAKQLFREVRGLPKYDP 562
             + +  +R  R   ++ P
Sbjct: 221 SNRYRNSYRPSRPQREHSP 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,264,917
Number of Sequences: 5004
Number of extensions: 64454
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)