Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_D20
(912 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processi... 31 4.4
BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processi... 31 4.4
AY211915-1|AAO65168.1| 148|Homo sapiens sarcoma antigen NY-SAR-... 31 4.4
AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processi... 31 4.4
AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processi... 31 4.4
AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processi... 31 4.4
AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processi... 31 4.4
AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens ... 31 4.4
>BC132963-1|AAI32964.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 31.5 bits (68), Expect = 4.4
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 254 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 427
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 407 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 466
Query: 428 NSKEVRRSSIGTT 466
++K R S G T
Sbjct: 467 SNKRSRSGSQGRT 479
>BC130346-1|AAI30347.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 31.5 bits (68), Expect = 4.4
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 254 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 427
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 407 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 466
Query: 428 NSKEVRRSSIGTT 466
++K R S G T
Sbjct: 467 SNKRSRSGSQGRT 479
>AY211915-1|AAO65168.1| 148|Homo sapiens sarcoma antigen NY-SAR-27
protein.
Length = 148
Score = 31.5 bits (68), Expect = 4.4
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 254 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 427
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 9 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 68
Query: 428 NSKEVRRSSIGTT 466
++K R S G T
Sbjct: 69 SNKRSRSGSQGRT 81
>AL591719-6|CAH72070.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 31.5 bits (68), Expect = 4.4
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 254 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 427
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 296 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 355
Query: 428 NSKEVRRSSIGTT 466
++K R S G T
Sbjct: 356 SNKRSRSGSQGRT 368
>AL591719-5|CAH72069.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 31.5 bits (68), Expect = 4.4
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 254 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 427
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 407 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 466
Query: 428 NSKEVRRSSIGTT 466
++K R S G T
Sbjct: 467 SNKRSRSGSQGRT 479
>AL160171-7|CAI12934.1| 435|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 435
Score = 31.5 bits (68), Expect = 4.4
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 254 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 427
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 296 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 355
Query: 428 NSKEVRRSSIGTT 466
++K R S G T
Sbjct: 356 SNKRSRSGSQGRT 368
>AL160171-6|CAI12933.1| 546|Homo sapiens PRP38 pre-mRNA processing
factor 38 (yeast) domain containing B protein.
Length = 546
Score = 31.5 bits (68), Expect = 4.4
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 254 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 427
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 407 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 466
Query: 428 NSKEVRRSSIGTT 466
++K R S G T
Sbjct: 467 SNKRSRSGSQGRT 479
>AK001192-1|BAA91546.1| 546|Homo sapiens protein ( Homo sapiens
cDNA FLJ10330 fis, clone NT2RM2000624, weakly similar to
SPLICING FACTOR, ARGININE/SERINE-RICH 4. ).
Length = 546
Score = 31.5 bits (68), Expect = 4.4
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 254 KDDQNLVDTNKDSHKKYYHTVTGASSRKYSPITRVMDI-FRSKPHS-ENNQTPADAAKKK 427
KDD+ D +DS K+ H+ + + RK+ +R + RS+ S E + + +K+K
Sbjct: 407 KDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEK 466
Query: 428 NSKEVRRSSIGTT 466
++K R S G T
Sbjct: 467 SNKRSRSGSQGRT 479
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,994,387
Number of Sequences: 237096
Number of extensions: 1849428
Number of successful extensions: 3814
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3814
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11825849886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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