Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D19
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   3.7  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    27   4.9  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   4.9  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    27   4.9  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   6.5  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   8.6  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 364 NDVCASLWFTYFLVYFKLVLEFSNVQS 444
           N VC S +F ++LV+  LVL  S + S
Sbjct: 732 NKVCTSQYFMWYLVFLPLVLPNSKLLS 758


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 635 VNEHPTHSEKINGNEVTTQIVPN 567
           V  HP+HSE  + +E T ++ P+
Sbjct: 57  VGPHPSHSENASDSETTLEVSPD 79


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +1

Query: 304 FIDISTSLKLQLGYGIGHVLNDVCASLWFTYFL--VYFKLVLEFSNVQSGTLMLVGQMVD 477
           F+  S   KL +  GIG  + D+C++L+ T  +  +  KL    SN Q   L+ +  ++ 
Sbjct: 520 FVYASREQKLSMLNGIGEGIVDICSNLYGTRSMQNIIDKLT---SNEQISLLLKI--IIP 574

Query: 478 ALATPFIGYHSDHTDNFWSAKYGRRKLWHLF 570
           +L T     +  H      AK+   KL  LF
Sbjct: 575 SLTTLACDNNGTHVLQKCIAKFPPEKLEPLF 605


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = -2

Query: 293 ILCFLVSVLYHYFLVLLAI----VYHYFDYLLCIVLHSK*MPQISTYNSYDILIHGYKYV 126
           +L FL+S L H F++LLA      Y     LL I L+   + Q+  +   DIL + + ++
Sbjct: 464 LLTFLISALVHEFVMLLATGKFRCYILTFQLLQIPLYD--LQQMFAFKKRDILGNVFFWI 521

Query: 125 GL 120
           G+
Sbjct: 522 GM 523


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 564 FVWYNLCCDLISIYLF*MCWMFIDTQMGSNVL 659
           F+W  L  +L ++ L  M  + +D Q+  N+L
Sbjct: 283 FLWQGLSLELFTVCLVIMAHLHVDVQIPPNIL 314


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = -2

Query: 323 LVDISINSLSILCFLVSVLYHYFLVLLA----IVYHYFDYLLCIVLH 195
           LV  + N  SI  F   + Y Y  +LL     I+Y+Y+  L+C+  H
Sbjct: 34  LVSNAPNIYSIPFFYDRICYDYKNILLKYELFIIYYYYYLLICLSPH 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,697,766
Number of Sequences: 5004
Number of extensions: 77751
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)