Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D19
         (924 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   2.2  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   2.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.8  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 269 LYHYFLVLLAIVYHYFDYLLCIVLHSK*M 183
           ++ YF+ L  I+Y Y+  +  +  H K M
Sbjct: 222 IWVYFVPLFLIIYSYWFIIQAVAAHEKNM 250


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 269 LYHYFLVLLAIVYHYFDYLLCIVLHSK*M 183
           ++ YF+ L  I+Y Y+  +  +  H K M
Sbjct: 98  IWVYFVPLFLIIYSYWFIIQAVAAHEKNM 126


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 834 IXLHIQENVPXTSRASDQVGNQ 899
           + + I EN+P + R +D  GN+
Sbjct: 358 VSMKIMENLPQSGRINDPEGNE 379


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 317 DISINSLSILCFLVSVL-YHYFLVLLAIVYHYFDYLLCIVLHSK 189
           D   ++  I  F+ ++  + Y + ++ I+Y+Y   +  +V H K
Sbjct: 200 DYLTDTNEIRIFVATIFTFSYCIPMILIIYYYSQIVSHVVNHEK 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,509
Number of Sequences: 438
Number of extensions: 5287
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)