Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D17
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   1.8  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    27   2.9  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.8  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   5.0  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    27   5.0  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    27   5.0  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   8.8  

>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect(2) = 1.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 222 TCPSCHASVMTKITTKASTKTHI 290
           TCPSCH S  +++   + T + I
Sbjct: 228 TCPSCHYSTNSEMLDLSKTSSDI 250



 Score = 21.8 bits (44), Expect(2) = 1.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 363 NSDHYCPNCNAYIGTYT 413
           +SD  CPNCN  + + T
Sbjct: 247 SSDISCPNCNDQLTSTT 263


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 175 FDRSRWSQSVQIQHR*PVHRATR 243
           F R+ W++ V  Q R P+HRA R
Sbjct: 181 FQRNNWNRVVAFQTRNPMHRAHR 203


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 339 PYCMDSCMNSDHYCPNCNAYIGT 407
           PY +++C N   Y  NCN+ + T
Sbjct: 203 PYLVNTCFNGTQYPVNCNSALRT 225


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 7/30 (23%), Positives = 20/30 (66%)
 Frame = +3

Query: 438 IAYSCMPFEDLHLYSFVYIFNNHMISLKFG 527
           ++++ + ++ L  Y + Y++ NH ++L+ G
Sbjct: 177 LSFAELTYQLLQAYDYSYLYENHSVNLQIG 206


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +3

Query: 465 DLHLYSFVYIFNNHMISLK-FGLMLYSSVEYILQLHLKALAVVNVLYLLII 614
           D++   ++ IF   +I +  FG+ ++  VE++L L +K +A V  + L II
Sbjct: 186 DVNCAVWISIFLVVVIGINLFGVRVFGEVEFVLAL-IKVVATVGFIILAII 235


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +2

Query: 248 HDQNHDQSQHEDSHHRTHPVFVHVLALRMSAILHG---LVHEFGPLLSKLQRLHRNLY 412
           H +  ++ Q   + H    +  HV A+ M  +      +V EF PL+S++ R+++N Y
Sbjct: 30  HIERFEREQASLNMHVKTELEKHVEAVEMLTLCESAREMVDEF-PLISRMSRIYKNCY 86


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 260 DFGHDRRVARWTGYLCWIWTDCDHLDRSKL 171
           D    R+ A W  Y    W DC H   +++
Sbjct: 590 DGNRRRKAAFWFAYSAGFWRDCGHCKMAEI 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,167
Number of Sequences: 5004
Number of extensions: 57326
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)