Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D17
         (940 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    28   0.14 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   9.2  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 453 MPFEDLHLYSFVYIFNNHMISLKFGLMLYSSVEYILQLHLKA 578
           +PF  + + + +  +   +    F LML S + Y+ +LH+ A
Sbjct: 296 IPFNGIQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHVDA 337


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 450 RNTQYVHIHEIILYRFRCRRCS 385
           R  QY+++H+ +L R+   R S
Sbjct: 272 RGAQYLYLHQQLLARYELNRLS 293


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +3

Query: 360 MNSDHYCPNCNAYIGTYTR*FHE 428
           M   HYC   N Y    T  FH+
Sbjct: 6   MAGQHYCLRWNNYQSNMTSVFHQ 28


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/39 (23%), Positives = 16/39 (41%)
 Frame = -1

Query: 796 HXXDXXKVXNXXMXLFGDYTEDLNISSDLKSKIIDKCMM 680
           H     KV      +FGD          L+ K +++C++
Sbjct: 367 HPDIQEKVIQELDEIFGDSDRPATFQDTLEMKYLERCLL 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,265
Number of Sequences: 438
Number of extensions: 4169
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30718506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)