Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_D14
(919 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 136 4e-33
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 30 0.40
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 29 0.92
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 28 1.6
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c... 28 1.6
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 28 2.1
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 27 2.8
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa... 27 2.8
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 27 3.7
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 3.7
SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb... 26 6.5
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 26 6.5
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 8.6
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 8.6
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 136 bits (329), Expect = 4e-33
Identities = 90/224 (40%), Positives = 125/224 (55%), Gaps = 1/224 (0%)
Frame = +1
Query: 193 KVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKS 372
K LLLDIEGT SISFVKDKLFPYA + +++ ++ ++ LR+L K+
Sbjct: 3 KNLLLDIEGTVGSISFVKDKLFPYAASRYESYVNENYESDE------NLRELG-----KT 51
Query: 373 VEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVY 552
E E L+ N++ + K K +QG IWKKGY+ ++ H++
Sbjct: 52 PE----------------EALI-NLRKLHAEGSKERSFKMVQGRIWKKGYESNELTSHLF 94
Query: 553 DDVLPALEQWRSVE-GQKIYIYSSGSVQAQKLLFGQSSAGDLLPLIDGHFDTAVGAKQEA 729
DV+PA++ RS++ G ++YIYSSGSV AQKL F S AG+LL G++DT +G K E
Sbjct: 95 PDVVPAIQ--RSLQLGMRVYIYSSGSVPAQKLYFEHSDAGNLLKYFSGYYDTTIGLKTEC 152
Query: 730 TSYTAIVXKIGCKPEEILFLTDIEKXAEAARTNGVNVALVSREG 861
SY IV P E LFL+D +AAR G++ LV R G
Sbjct: 153 GSYVKIVG--NSNPREWLFLSDNINELKAARKVGLHTGLVVRPG 194
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 30.3 bits (65), Expect = 0.40
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 259 PYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKSV 375
PY+ E VK+ L + EEDV +AL L+ QE S+
Sbjct: 355 PYSHEEVKEILKIRCQEEDVDMEPSALDYLSTIGQETSL 393
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 29.1 bits (62), Expect = 0.92
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 346 LAIEDQEKSVEGLVTIPGE--DASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKG 519
L ++D EK ++ P E + KE +G V N +SSD+ ++ + L +
Sbjct: 581 LPVKDDEKDLDLRELNPLEPFENMKEQADDGTVTN-PLNVSSDKAMS----VYLLSSENA 635
Query: 520 YDKGDIKGHVYDDVLPALE 576
D GDIK D VLP LE
Sbjct: 636 KDTGDIKSESIDAVLPTLE 654
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +1
Query: 334 ALRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLI 507
AL KL + +VT G A KED+ + ++ MS+ RKVA LK+L+G I
Sbjct: 329 ALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDL---MSAARKVADLKKLEGTI 383
>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +1
Query: 187 KSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDEEDVKEAVNALRKLAIEDQE 366
+ ++ L +E T TSI + +FPY + F W +D + L L + ++
Sbjct: 182 QDRISALILENTFTSIKDMIPTVFPYGGSIISRFCTEIWSSQDEIRKIKKLPVLFLSGEK 241
Query: 367 KSV 375
+
Sbjct: 242 DEI 244
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 27.9 bits (59), Expect = 2.1
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 271 ENVKDFLDAQWDE-EDVKEAVNALRKLAIEDQEKSVEGLVTIPGEDASKED 420
EN L Q+D+ E + V+ K A+ D + V + I GEDASKE+
Sbjct: 571 ENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEE 621
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 532 DIKGHVYDDVLPALEQWRSVEGQKIYI 612
D G+VY+D + L++ + G KIYI
Sbjct: 118 DEDGYVYEDTMKHLDKITEITGAKIYI 144
>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 191
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 750 DNGS-VTGSFLFSTYSSVEMAIDERK*VPSR*LAKKKFLGLDG 625
D+GS + +FL Y + E + P L K+FLGLDG
Sbjct: 7 DSGSDLVDAFLSDAYLNTEELRKDGPFSPDEFLVSKRFLGLDG 49
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 406 HPLQEW*PVLQHSSPD 359
HP +EW LQH+SPD
Sbjct: 270 HPFKEWLLNLQHTSPD 285
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 27.1 bits (57), Expect = 3.7
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -3
Query: 248 SLTKLIDVVVPSISRSKTLLFLTISPITVFSFAISTDPHQLCRNYFYVFQNL 93
++ +I + P + SK +F+ ITVF S DP+ + N+ +V++ L
Sbjct: 182 TIRDVISLAFPVLD-SKNCVFIMDEIITVFINNSSNDPNLISENWDFVWKKL 232
>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = -1
Query: 715 HLQQCRNGHR*EEVGPQQMTGQKEVSGLGRIQRSKCKSSDPLLNAIVQE 569
+L C +G + ++GP M +VS LGRI+ ++ +A++QE
Sbjct: 165 NLYGCGDGRK-GQLGPVVMKTVNKVSFLGRIEHAQAVVCGVQFSAVLQE 212
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 268 EENVKDFLDAQWDEEDVKEAVNALRKLAIEDQEKS 372
EEN + L A DEEDV+ A A ++ A+E E S
Sbjct: 1180 EENWEVALAAAEDEEDVQAAQVARKESALEQTEFS 1214
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = -3
Query: 842 ATFTPLVRAASAXFSISVKNKISSGLQPIXSTMAV*LVASCLAPTAVSKWPSMRGSRSPA 663
AT + +V +A++ S + + I S P ++ + S + T + S S +
Sbjct: 204 ATISSVVDSATSSVSTVIPSSIISAAPPDSASESTPASTSYASSTTSATSTSTTSGSSGS 263
Query: 662 DDWPKRSFW 636
DW + SF+
Sbjct: 264 SDWGRSSFY 272
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.8 bits (54), Expect = 8.6
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = +1
Query: 511 KKGYDKGDIKGHVYDDVLPALEQWRSVEGQKIYIYSSGSVQAQKLLFGQSSAGDLLPLID 690
++ YD + + YD ++ EQ+ + GQ+ ++ S G Q Q++ ++ D L+
Sbjct: 535 RRVYDAAKL-ANAYDFIMTLPEQFSTNVGQRGFLMSGG--QKQRIAIARAVISDPKILLL 591
Query: 691 GHFDTAVGAKQEATSYTAI 747
+A+ +K E A+
Sbjct: 592 DEATSALDSKSEVLVQKAL 610
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,588,977
Number of Sequences: 5004
Number of extensions: 76283
Number of successful extensions: 230
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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