Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D13
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    26   6.4  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   6.4  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    26   8.4  

>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 321 RLIRLISGYVFGSRLAPSRXSLVKLLR 401
           RL+ L  GY++G RL   + SL+  LR
Sbjct: 231 RLVYLPMGYMYGERLKCPKDSLIMQLR 257


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 276 WSPASRTRAYHRLCFRLIRLIS-GYVFGSRLAPSRXSLVK 392
           W+ A + R  +  CF + RL+S GY+  S+L     SL K
Sbjct: 262 WTEAEQKRRVYWACFFVERLLSTGYMAPSKLRSLSLSLQK 301


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 513 KYNNIVSLLMLPSKISSKIKYF*VFR 436
           K  NI+S  + P +ISS I Y  VFR
Sbjct: 95  KDGNIISASVAPQRISSVIDYADVFR 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,829
Number of Sequences: 5004
Number of extensions: 46844
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)