Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D13
         (903 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.94 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +3

Query: 204 QITLGQYYIVHYNTDTTWRIQVGGWSPASRTRAYHRLCFRLIRLISGYVF 353
           Q+TL + Y    NT   +R     W  A R       CF  +  + G V+
Sbjct: 524 QLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVW 573


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 591 ITKNVWMESKTMFYSFQFIMKSSVKLKYNNIVSLLMLPSKISSKI 457
           IT N+ M  KT+FY+   I+   V + +  ++ +  LPS    K+
Sbjct: 239 ITFNITMRRKTLFYTVNLII-PCVGITFLTVL-VFYLPSDSGEKV 281


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 591 ITKNVWMESKTMFYSFQFIMKSSVKLKYNNIVSLLMLPSKISSKI 457
           IT N+ M  KT+FY+   I+   + + +  +++   LPS    K+
Sbjct: 234 ITFNITMRRKTLFYTVNIII-PCMGISFLTVLT-FYLPSDSGEKV 276


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 591 ITKNVWMESKTMFYSFQFIMKSSVKLKYNNIVSLLMLPSKISSKI 457
           IT N+ M  KT+FY+   I+   + + +  +++   LPS    K+
Sbjct: 234 ITFNITMRRKTLFYTVNIII-PCMGISFLTVLT-FYLPSDSGEKV 276


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 591 ITKNVWMESKTMFYSFQFIMKSSVKLKYNNIVSLLMLPSKISSKI 457
           IT N+ M  KT+FY+   I+   + + +  ++ +  LPS    K+
Sbjct: 230 ITFNITMRRKTLFYTVNLII-PCMGISFLTVL-VFYLPSDSGEKV 272


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,397
Number of Sequences: 438
Number of extensions: 3278
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)