Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D12
         (949 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    34   0.025
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    31   0.18 
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    29   0.96 
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    28   1.7  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    28   1.7  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    28   2.2  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.9  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    27   5.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   6.7  
SPAC869.10c |||proline specific permease |Schizosaccharomyces po...    26   6.7  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    26   8.9  

>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 34.3 bits (75), Expect = 0.025
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +1

Query: 418 NTKTPIPSEDGKQSEFECPVCSKIFKVYSWAWKHIQKYH 534
           N KT +P   G +S F CP CSK FK      +HI+  H
Sbjct: 409 NRKTSVPRSPGGKS-FVCPECSKKFKRSEHLRRHIRSLH 446


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 501 LLGLETHPEISLH*REREPCFTNIERYNQASSY 599
           L  +E HP++S+H  +  PC T I R++Q  S+
Sbjct: 373 LYEIENHPQVSVH-MDVYPCMTGITRFSQLPSW 404


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 20/84 (23%), Positives = 37/84 (44%)
 Frame = +1

Query: 262 KKRIAYRPKTEVIAKRKLIPHKKVIKVAHKMNKTSENASTKKSQPHNLLRKYNTKTPIPS 441
           KKR+  R K  ++++  +  H  ++ V     K  E+   K+     + +  N      +
Sbjct: 317 KKRVWSREK-RLLSEMAITNHSPLLNV-DDYRKFREDLWKKRHGKRKVYQCSNCSQTFIN 374

Query: 442 EDGKQSEFECPVCSKIFKVYSWAW 513
           ED + S   CP C +  K++S  W
Sbjct: 375 EDIQNSSAFCPKCIRHSKLFSLPW 398


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 586 KPVRIERCIACNVLIKSDDHTC 651
           KP R + C  CN+ ++  DH C
Sbjct: 167 KPARSKHCRLCNICVEKFDHHC 188


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = +1

Query: 280 RPKTEVIAKR--KLIP-HKKVIKVAHKMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDG 450
           RP +E+I  R     P H+  +      N    N S + SQ HNL        P  S   
Sbjct: 208 RPPSELINSRISDFFPDHQPKLLEKTISNSLRRNLSIRTSQGHNLGNFGQEILPRSSRRA 267

Query: 451 KQSEFECPVCS 483
           + SE  CP+ S
Sbjct: 268 RPSELVCPLSS 278


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 349 KMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDG 450
           ++NK  EN  T+     NLL+K+ T +P PS +G
Sbjct: 169 EINKIPENIVTQSLSYTNLLKKFET-SPNPSNNG 201


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 346 HKMNKTSENASTKKSQPHNLLRKYNTKTPIPSEDGKQSEFECPVCSK-IFKVYSWAWKHI 522
           +K ++ S N+  KK  P       +TKT + +    +   ECP+C++ + + ++    H 
Sbjct: 51  YKKSRISSNSENKKQIP-------DTKTLLETFQKIKKTLECPICTEALQRPFTTHCGHT 103

Query: 523 QKYHCI 540
             Y C+
Sbjct: 104 YCYECL 109


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 329 FLWGISFLLAITSVLGRYAILFFSGWATAWCERNA 225
           FL  +    AI  +LG    +F SG+ T WC +NA
Sbjct: 388 FLTYLDLRQAIGLILGVLHTVF-SGYTTVWCPQNA 421


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -3

Query: 521  MCFQAQE*TLNILEQTGHSNSDCFPSSLGIGVLVLYFLNKLCG 393
            +CF A++ T++    TG  N      +  +G+   +F+ K CG
Sbjct: 1939 ICFNARQNTVSSRRLTGECNKHAATCTGSVGI---FFITKACG 1978


>SPAC869.10c |||proline specific permease |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 552

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 23/111 (20%), Positives = 43/111 (38%)
 Frame = -3

Query: 383 FVEAFSDVLFILWATFITFLWGISFLLAITSVLGRYAILFFSGWATAWCERNACTFLNPR 204
           F+ A  +  F+ W     F + I  ++AI  ++    ++FF G  T   +R    +    
Sbjct: 165 FLVAVLNSFFVKWFGETEFWFAIIKVIAIVGLIILGVVIFFGG--TPKHDRLGFRYWKHG 222

Query: 203 AQVSHLHVNR*LLNFPGIFEPILCSAFVSIRS*KCIFFTVQATRTILENVP 51
                  V      F G +  ++ S F  I + + + F+   T     N+P
Sbjct: 223 LAFREYIVKGASGRFVGFWSAVIKSGFAFILAPELVIFSAGETEAPRRNIP 273


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +1

Query: 358 KTSENASTKKS--QPHNLLRKYNTKTPIPSEDGKQSEFECPVCSKI 489
           K S+ AS+ +S   PH +L  +      PS+  + +  EC  CSKI
Sbjct: 115 KESQLASSAESIYNPH-ILNTFCLGKTAPSDKNRYTTTECLACSKI 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,813,664
Number of Sequences: 5004
Number of extensions: 84383
Number of successful extensions: 259
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)