Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D10
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces...    95   1e-20
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    57   3e-09
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha...    49   1e-06
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    47   3e-06
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy...    44   3e-05
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch...    44   4e-05
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    32   0.099
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    31   0.17 
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    31   0.23 
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    29   1.2  
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch...    27   2.8  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   3.7  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    27   4.9  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    26   6.5  

>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 77

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 40/76 (52%), Positives = 62/76 (81%)
 Frame = +1

Query: 166 MSKAHPPELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 345
           MSKA  P+LKK++D+++ ++LN  R V GVLRG+D F+N+VL++S+EE  DG++  +G V
Sbjct: 1   MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSV 60

Query: 346 VIRGNSIIMLESLDRL 393
            IRGNS+IM+E+LD++
Sbjct: 61  AIRGNSVIMIETLDKM 76


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
 Frame = +1

Query: 187 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD-------GQRNNVGMV 345
           +L ++ D+++      GR +TG+L+GFD  MNLVLD+  E+ ++       G    +G+V
Sbjct: 27  DLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLV 86

Query: 346 VIRGNSIIMLESLD 387
           V+RG +++++  +D
Sbjct: 87  VVRGTTLVLIAPMD 100


>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
           Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 75

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
 Frame = +1

Query: 190 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV-GMVVIRGNSI 366
           L K + KK+ I+L++G    G+L   D +MNL L E  EE  +G++ NV G   IRGN++
Sbjct: 9   LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNV 67

Query: 367 IMLESLD 387
           + + +LD
Sbjct: 68  LYVSALD 74


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
 Frame = +1

Query: 190 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC-KDGQRNNV--GMVVIRGN 360
           L  ++D+K+ + L  G+ + G+LR FD F NL+L  ++E    D    ++  G+ ++RG 
Sbjct: 16  LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75

Query: 361 SIIMLESLD 387
           ++++L  LD
Sbjct: 76  NVVLLGELD 84


>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 84

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 15/45 (33%), Positives = 33/45 (73%)
 Frame = +1

Query: 250 GVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESL 384
           G +RGFD FMN+VLD++V+      +  +G ++++G++I +++++
Sbjct: 40  GQIRGFDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITLIQAI 84


>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
 Frame = +1

Query: 190 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC----KDGQRNNVGMVVIRG 357
           L  FM++++ +  N GR V G L+GFD   NL+L +S E      +D +   +G+ ++RG
Sbjct: 3   LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62

Query: 358 NSIIML 375
            ++ M+
Sbjct: 63  ENVAMV 68


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 32.3 bits (70), Expect = 0.099
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
 Frame = +1

Query: 187 ELKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV---------- 336
           ++   ++  L++    GR   G L  FD FMNLVL +  +E +  ++ NV          
Sbjct: 5   KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSD-CQEYRHIKKQNVPSNSVYEEKR 63

Query: 337 --GMVVIRGNSIIML 375
             G+V++RG  I+ L
Sbjct: 64  MLGLVILRGEFIVSL 78


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 208 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSIIMLESL 384
           + + ++L  G    G L   D +MNL L E +    DG +   +    IRGN+I  L   
Sbjct: 13  RPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQ 72

Query: 385 DRL 393
           D +
Sbjct: 73  DEV 75


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 190 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSI 366
           + K +   L + + + R   G L GFD ++N+VL +  E +   G       +++ GN +
Sbjct: 11  IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGM 70

Query: 367 IML 375
            ML
Sbjct: 71  CML 73


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 175 AHPPELKKF-MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 306
           A P +L +  +D+ + +KL   R + G L  +D  +N+VL ++ E
Sbjct: 8   AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEE 52


>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 96

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = +1

Query: 193 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD 294
           K  +D +++++L    ++ G+L+  D F+N+ L+
Sbjct: 8   KTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLE 41


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 287  TKFMNGSKPRNTPVTARPAFSFIDNFLSMNF 195
            T+   GSKP NT V A    S ++  ++MNF
Sbjct: 919  TQLNTGSKPVNTNVEALTTISSMNQAVNMNF 949


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -3

Query: 444 EAHLQHW*YFLPTPSLLK--SV*RFQHYNTV 358
           ++H  HW Y LPT + LK  SV R  +Y+ V
Sbjct: 247 DSHNSHWWYNLPTEARLKGLSVGRTTNYSVV 277


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 381 RFQHYNTVATNYHHPNIVTL 322
           R Q   T+    HHPNI+TL
Sbjct: 67  RLQREVTILRQLHHPNIITL 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,135
Number of Sequences: 5004
Number of extensions: 47539
Number of successful extensions: 121
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)