Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D06
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.026
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.026
 Identities = 17/47 (36%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
 Frame = +3

Query: 828 KNPPXPPPXFXXXXXKKKNLPXXPRXX--GGAXPPPPGXXXPGGGXP 962
           K+PP PPP           +P  P     GG  PPPP     G G P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 29.1 bits (62), Expect = 0.98
 Identities = 17/52 (32%), Positives = 17/52 (32%)
 Frame = +2

Query: 791 PPXKXKKXGXXPKKPPXPPPXFXXXGXXKKKPPXXPPXXXGGSXPPPRXXXP 946
           PP         P   P PPP     G     PP  PP   G   PPP    P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPP---PPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 3.0
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +2

Query: 776 GGXGXPPXKXKKXGXXPKKPPXPPPXFXXXG 868
           GG   PP      G  P  PP PPP     G
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 833 PPXPPPXFXXXGXXKKKPPXXPPXXXGG 916
           PP PPP     G     PP  PP    G
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAG 788


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
 Frame = +2

Query: 830 KPPXPPPXFXXXGXX----KKKPPXXPPXXXGGSXPPP 931
           KPP PPP            KK+PP  PP        PP
Sbjct: 289 KPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326



 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/49 (26%), Positives = 17/49 (34%)
 Frame = +3

Query: 816 GSXXKNPPXPPPXFXXXXXKKKNLPXXPRXXGGAXPPPPGXXXPGGGXP 962
           G+   N   PPP          ++P  P+      PPPP      G  P
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 19/51 (37%), Positives = 19/51 (37%)
 Frame = -3

Query: 930 GGGXEPPXXLGGXXGGFFFXXPXXXKXGGGXGGFXGXXPXFFXFXGGXPXP 778
           GG    P   GG  GGF          GGG GGF G    F    GG   P
Sbjct: 231 GGFEGGPGGFGGGPGGF----------GGGLGGFGGGPGGFGGGPGGHGGP 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,991
Number of Sequences: 5004
Number of extensions: 15695
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)