Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D06
         (962 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   9.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   9.5  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   9.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +2

Query: 884 PPXXPPXXXGGSXPPPRXXXPXGGXP 961
           P   P     GS P P    P GG P
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPP 52


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 833 PPXPPPXFXXXGXXKKKPPXXP 898
           PP P P F      + +PP  P
Sbjct: 158 PPTPFPRFIPPNAYRLRPPLNP 179


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 833 PPXPPPXFXXXGXXKKKPPXXP 898
           PP P P F      + +PP  P
Sbjct: 158 PPTPFPRFIPPNAYRLRPPLNP 179


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = +2

Query: 833 PPXPPPXFXXXGXXKKKPPXXP 898
           PP P P F      + +PP  P
Sbjct: 386 PPTPFPRFIPPNAYRLRPPLNP 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,968
Number of Sequences: 438
Number of extensions: 3537
Number of successful extensions: 31
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)