Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D04
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    71   2e-13
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    27   3.7  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   4.9  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   4.9  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    26   8.5  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 70.9 bits (166), Expect = 2e-13
 Identities = 34/75 (45%), Positives = 52/75 (69%)
 Frame = +1

Query: 328 KKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEAKIEDLST 507
           +KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P VYK+  ++ YIV G+  +ED++ 
Sbjct: 25  EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83

Query: 508 QATMAAAERFKAPET 552
           QA      + +A ET
Sbjct: 84  QARAFNESQKQATET 98



 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = +2

Query: 665 IVMXQANVSRAKAVRALKNNQSDIVNAIMELTM 763
           +VM QANVSRAKAV ALK N SD+VNAIM LTM
Sbjct: 141 LVMAQANVSRAKAVTALKENNSDVVNAIMSLTM 173


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 115 QQYIKMPELTELDKATASMTEKRKEE 192
           ++YIK  +LTELD     +T+ RK +
Sbjct: 205 KEYIKKCQLTELDPTQQLLTQSRKNQ 230


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 517 MAAAERFKAPETTATGNDASTTGTTVA 597
           M+AA   +AP  T +G  +STT ++VA
Sbjct: 627 MSAATTSRAPSGTTSGTASSTTSSSVA 653


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 517 MAAAERFKAPETTATGNDASTTGTTVA 597
           M+AA   +AP  T +G  +STT ++VA
Sbjct: 627 MSAATTSRAPSGTTSGTASSTTSSSVA 653


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 399 SDCHSLYSLYWFETEFTHYLSGLLLTTRLFRF 304
           +D    ++L W  T F H +S + +  RLF F
Sbjct: 184 ADIQCYFALSWLITWFAHDVSDISVVCRLFDF 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,632
Number of Sequences: 5004
Number of extensions: 55698
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)