Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D04
         (912 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098          114   1e-25
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087...   110   2e-24
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825...    31   1.7  
04_04_0360 - 24684159-24684565,24684654-24685089                       29   3.9  
03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184     29   6.8  
11_01_0600 - 4780579-4780839,4781256-4781324,4781535-4781598,478...    28   9.0  

>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
          Length = 221

 Score =  114 bits (274), Expect = 1e-25
 Identities = 50/78 (64%), Positives = 67/78 (85%)
 Frame = +1

Query: 307 SKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSPDVYKNPHSDTYIVFGEA 486
           SKQSR EKK+RK M KLG+KPV GV R+TI+++KNILFV++ PDV+K+P S+TY++FGEA
Sbjct: 75  SKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEA 134

Query: 487 KIEDLSTQATMAAAERFK 540
           KIEDLS+Q    AA++F+
Sbjct: 135 KIEDLSSQLQAQAAQQFR 152



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/32 (71%), Positives = 28/32 (87%)
 Frame = +2

Query: 665 IVMXQANVSRAKAVRALKNNQSDIVNAIMELT 760
           +VM QA+VSRAKAV+ALK +  DIV+AIMELT
Sbjct: 189 LVMTQASVSRAKAVKALKAHDGDIVSAIMELT 220


>01_07_0123 +
           41206782-41206844,41207701-41207782,41208587-41208717,
           41208758-41209147
          Length = 221

 Score =  110 bits (264), Expect = 2e-24
 Identities = 60/108 (55%), Positives = 74/108 (68%), Gaps = 19/108 (17%)
 Frame = +1

Query: 283 AGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKN----------------- 411
           AG D   +SKQSR EKK+RK M KLG+K + GV RVTI+KSKN                 
Sbjct: 50  AGGDASGRSKQSRSEKKSRKAMQKLGMKTITGVSRVTIKKSKNAHRIVIYHCILLNFSLH 109

Query: 412 --ILFVINSPDVYKNPHSDTYIVFGEAKIEDLSTQATMAAAERFKAPE 549
             ILFVI+ PDV+K+P+SDTY++FGEAKIEDLS+Q    AAE+FKAP+
Sbjct: 110 YQILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQLQTQAAEQFKAPD 157



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = +2

Query: 665 IVMXQANVSRAKAVRALKNNQSDIVNAIMELT 760
           +VM QA VSR++AV+ALK    DIV AIMELT
Sbjct: 189 LVMTQATVSRSRAVKALKAANGDIVTAIMELT 220


>08_02_0516 +
           18080706-18080760,18081796-18081885,18082479-18082573,
           18083658-18083726,18083812-18084393
          Length = 296

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 458 QTPTLFLVKPRLKICPHRPPWLQQRDSRHQRPQPLA 565
           Q P    ++ +L   P +PP LQ +   HQ+PQP A
Sbjct: 244 QQPPQLQLQSQLHPQPQQPPQLQPQPQLHQQPQPQA 279


>04_04_0360 - 24684159-24684565,24684654-24685089
          Length = 280

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 585 SSCGSVIASGCGLWCLESLCCSHGGLCG 502
           S+ G   A  CG  C  ++CCS  G CG
Sbjct: 14  SATGQASAQNCG--CQSNMCCSKWGYCG 39


>03_05_0323 + 23102151-23102584,23102722-23102867,23102985-23103184
          Length = 259

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
 Frame = +1

Query: 256 DAGGITNPIAGIDIVSKSKQSRGEKKARKIMSKLGLKPVQGVERVTIRKSKNILFVINSP 435
           D G    P+   D+  +  Q RG+     I+  L LKP    E  +   S  +   + S 
Sbjct: 134 DLGEFVLPLFEEDVDIEDVQQRGQPDIPVIVQALTLKPFVQWEETSQSPSAEVNMAMTSL 193

Query: 436 DVYKN--PHSDTYIVFGEAKIEDLSTQATMAAAERFKAPE 549
           D ++N     D  I +   K+E    + TM   ++ +A E
Sbjct: 194 D-FENMLADRDRRIQYWRTKLEVAELKKTMVEVKKDQAVE 232


>11_01_0600 -
           4780579-4780839,4781256-4781324,4781535-4781598,
           4781791-4781919,4782234-4782541
          Length = 276

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 678 RRTSLERKQSERSRTTNLTLLMQLWS*QCRRSLRH 782
           RRT L R+   R R    T L  +WS  CR  L+H
Sbjct: 48  RRTWLRRRARRRERRRR-TWLPAMWSPDCRLELQH 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,920,170
Number of Sequences: 37544
Number of extensions: 372888
Number of successful extensions: 1137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)