Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D02
         (938 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    28   2.2  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    28   2.2  

>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 8/40 (20%), Positives = 23/40 (57%)
 Frame = +3

Query: 600 PTWLPNQKAELSVNEKPLEENPQDILNSLPPITRRDRTRI 719
           P+W   +  + S   +PL+ +P+ +++ +P +   D++ +
Sbjct: 275 PSWAHREDKKRSSKPQPLQPDPETVIHLVPTVLAGDKSSV 314


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = -1

Query: 158 IDLHVYI*SKRPINLSIIYVQVYILNSSHKINLKDVQNLKDSL 30
           + +H Y+ SKR +  SII  +++ +        KD++N+ + L
Sbjct: 305 VPVHAYLASKRILYPSIIPEEIFFMRKFDSSLFKDIKNIHELL 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,226
Number of Sequences: 5004
Number of extensions: 55628
Number of successful extensions: 151
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)