Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_D01
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       35   0.079
01_03_0005 + 11568545-11569119,11569179-11569191                       29   3.0  
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    28   9.1  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 34.7 bits (76), Expect = 0.079
 Identities = 19/52 (36%), Positives = 20/52 (38%)
 Frame = -2

Query: 744 GGGEXPXFFFFXXPGGGGXPPPPXXGGGXXFXXXXPXGGGXXFXXKKPPKXG 589
           GGG  P        GGG  PP P  GGG         GGG      +PP  G
Sbjct: 113 GGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGG 164



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -2

Query: 702 GGGGXPPPPXXGGGXXFXXXXPXGGGXXFXXKKPPKXG 589
           GGGG P     GGG       P GGG      +PP  G
Sbjct: 139 GGGGAPRRVLGGGGGGGALARPPGGGRGGALGRPPGGG 176



 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = -2

Query: 705 PGGGGXPPPPXXGGGXXFXXXXPXGGGXXFXXKKPPKXG 589
           P GGG  P P  GGG       P GGG       PP  G
Sbjct: 91  PPGGGGAPGPLGGGG----ARPPGGGGGGGPPSLPPGAG 125


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/37 (40%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = -2

Query: 702 GGGGX--PPPPXXGGGXXFXXXXPXGGGXXFXXKKPP 598
           GGGG   PPP   GGG         GGG  +    PP
Sbjct: 107 GGGGIYYPPPTGGGGGGGGGWQQGGGGGGAYPTPPPP 143


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -2

Query: 705 PGGGGX-PPPPXXGGGXXFXXXXPXGGGXXFXXKKPPKXGA 586
           PGGGG   PPP  GGG         GGG  +     P+  A
Sbjct: 388 PGGGGPGAPPPYHGGG---GGGGGGGGGGGYTGSAAPEPAA 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,957,591
Number of Sequences: 37544
Number of extensions: 308137
Number of successful extensions: 671
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)