Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_C24
(1065 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.21
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.28
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.84
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.5
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.5
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.21
Identities = 23/84 (27%), Positives = 25/84 (29%), Gaps = 1/84 (1%)
Frame = +2
Query: 596 PXXXPPXPXPXQTXXTPPXXXXXXPPXXPPPXPXPNXK-PDXPPXXXKTPGXXXPXXPXX 772
P PP P P T P P PPP P P+ + P P P P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGA--PSAPPPVPAPSSEIPSIPAPSGAPP---VPAPSGI 1091
Query: 773 PXXXXXXXXXKTXPKXXKNXPPXP 844
P PK PP P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVP 1115
Score = 28.7 bits (61), Expect = 1.5
Identities = 23/88 (26%), Positives = 24/88 (27%), Gaps = 4/88 (4%)
Frame = +2
Query: 596 PXXXPPXPXPXQTXXTPPXXXXXXPPXXP----PPXPXPNXKPDXPPXXXKTPGXXXPXX 763
P PP P P P P P PP P P+ P P P P
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176
Query: 764 PXXPXXXXXXXXXKTXPKXXKNXPPXPP 847
P PK PP PP
Sbjct: 1177 GIPP-----------VPKPAAGVPPVPP 1193
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/58 (27%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Frame = +2
Query: 596 PXXXPPXPXPXQTXXTPPXXXXXXPPXXP----PPXPXPNXKPDXPPXXXKTPGXXXP 757
P PP P P P P P PP P P+ P P P P
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP 1136
Score = 27.5 bits (58), Expect = 3.4
Identities = 20/85 (23%), Positives = 21/85 (24%), Gaps = 2/85 (2%)
Frame = +2
Query: 596 PXXXPPXPXPXQTXXTPPXXXXXXPPXXPPPXPXPNXKPD--XPPXXXKTPGXXXPXXPX 769
P PP P P P PP P P KP PP + P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSV 1147
Query: 770 XPXXXXXXXXXKTXPKXXKNXPPXP 844
PK PP P
Sbjct: 1148 AAPPVPAPSGAPPVPKPSVAAPPVP 1172
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/50 (28%), Positives = 14/50 (28%)
Frame = +2
Query: 608 PPXPXPXQTXXTPPXXXXXXPPXXPPPXPXPNXKPDXPPXXXKTPGXXXP 757
PP P P P PP PP P KP P P
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/39 (33%), Positives = 14/39 (35%)
Frame = +1
Query: 592 PPPXXXPPXPPXPNXTNPXXXXXXXXXXXPPPXPXPKRQ 708
P P PP P P T P PPP P P +
Sbjct: 1035 PVPSTAPPVP-IPTSTPPVPKSSSGAPSAPPPVPAPSSE 1072
Score = 26.6 bits (56), Expect = 5.9
Identities = 19/84 (22%), Positives = 20/84 (23%), Gaps = 4/84 (4%)
Frame = +1
Query: 460 PXPXPXXXXXXPXQXXXPXPTXXXXPXXXXPXXXXPP----KXQXXXPPPPXXXPPXPPX 627
P P P P P P P PP P P PP P
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174
Query: 628 PNXTNPXXXXXXXXXXXPPPXPXP 699
+ P PPP P
Sbjct: 1175 SSGIPPVPKPAAGVPPVPPPSEAP 1198
Score = 26.6 bits (56), Expect = 5.9
Identities = 21/88 (23%), Positives = 22/88 (25%), Gaps = 5/88 (5%)
Frame = +2
Query: 596 PXXXPPXPXPXQTXXTPPXXXXXXPPXXP-----PPXPXPNXKPDXPPXXXKTPGXXXPX 760
P PP P P P PP PP P P+ P P P P
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVP--PVPP 1212
Query: 761 XPXXPXXXXXXXXXKTXPKXXKNXPPXP 844
P P PP P
Sbjct: 1213 PSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.28
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +2
Query: 596 PXXXPPXPXPXQTXXTPPXXXXXXPPXXPPPXPXPNXKPDXPP 724
P P P P PP PP PPP P PP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 29.5 bits (63), Expect = 0.84
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = +1
Query: 466 PXPXXXXXXPXQXXXPXPTXXXXPXXXXPXXXXPPKXQXXXPPPPXXXPPXPP 624
P P P P P P P PP PPP PP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP--PPPPPP 783
Score = 29.1 bits (62), Expect = 1.1
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = +2
Query: 608 PPXPXPXQTXXTPPXXXXXXPPXXPPPXPXPNXKPDXPPXXXKTPGXXXPXXPXXP 775
PP P P TP P PPP P P PP P P P
Sbjct: 732 PPPPPPAVIVPTPAPA----PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.84
Identities = 20/78 (25%), Positives = 21/78 (26%), Gaps = 3/78 (3%)
Frame = +2
Query: 551 PXXXXPXXXXNXXXXPXXXPPXPX--PXQTXXTPPXXXXXXP-PXXPPPXPXPNXKPDXP 721
P P + P PP P P PP P P PP P P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184
Query: 722 PXXXKTPGXXXPXXPXXP 775
P P P P P
Sbjct: 185 PSAPSLPSAVPPMPPKVP 202
Score = 29.1 bits (62), Expect = 1.1
Identities = 21/82 (25%), Positives = 22/82 (26%), Gaps = 1/82 (1%)
Frame = +2
Query: 596 PXXXPPXPXPXQTXXTPPXXXXXXPPXXPP-PXPXPNXKPDXPPXXXKTPGXXXPXXPXX 772
P P P P Q+ PP P PP P P PP P P P
Sbjct: 124 PPSAPAPPTP-QSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVK 182
Query: 773 PXXXXXXXXXKTXPKXXKNXPP 838
P K PP
Sbjct: 183 SPPSAPSLPSAVPPMPPKVPPP 204
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.1 bits (62), Expect = 1.1
Identities = 22/80 (27%), Positives = 24/80 (30%)
Frame = +2
Query: 608 PPXPXPXQTXXTPPXXXXXXPPXXPPPXPXPNXKPDXPPXXXKTPGXXXPXXPXXPXXXX 787
PP +T TPP PP PP P P+ P PP P P P
Sbjct: 404 PPLGNASRTS-TPPVPT---PPSLPPSAP-PSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Query: 788 XXXXXKTXPKXXKNXPPXPP 847
P P PP
Sbjct: 459 LPAGMPAAPPLPPAAPAPPP 478
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/60 (28%), Positives = 17/60 (28%)
Frame = +2
Query: 596 PXXXPPXPXPXQTXXTPPXXXXXXPPXXPPPXPXPNXKPDXPPXXXKTPGXXXPXXPXXP 775
P PP P PP P P P P P PP P P P P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPA-APPLPPAAP 474
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/63 (26%), Positives = 17/63 (26%)
Frame = +1
Query: 511 PXPTXXXXPXXXXPXXXXPPKXQXXXPPPPXXXPPXPPXPNXTNPXXXXXXXXXXXPPPX 690
P PT P P PP P PP PP P PP
Sbjct: 416 PVPTPPSLPPSAPPSL--PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAA 473
Query: 691 PXP 699
P P
Sbjct: 474 PAP 476
Score = 27.5 bits (58), Expect = 3.4
Identities = 17/65 (26%), Positives = 17/65 (26%), Gaps = 1/65 (1%)
Frame = +3
Query: 567 PXXPXTXPXXPXXXPPX-PXXXKQXXPXPPXXXXXXPKXPPXTXXQTXNLTXXPXXXKPP 743
P P P P PP P P P P PP P PP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 744 XXPPP 758
P P
Sbjct: 478 PAPAP 482
Score = 27.1 bits (57), Expect = 4.5
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Frame = +2
Query: 680 PPPXPXPNXK-PDXPPXXXKTPGXXXPXXPXXPXXXXXXXXXKTXPKXXKNXPPXPPXR 853
PPP P P+ + PP + P P P P ++ PP PP R
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSI--PLPPQGRSAPPPPPPR 367
Score = 27.1 bits (57), Expect = 4.5
Identities = 18/81 (22%), Positives = 22/81 (27%), Gaps = 1/81 (1%)
Frame = +2
Query: 608 PPXPXPXQTXXTPPXXXXXXPPXXPPPXPXPNXKPDXPPXXXKTPGXXXPXX-PXXPXXX 784
PP P ++ P PP P+ P PP + P P P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLP 450
Query: 785 XXXXXXKTXPKXXKNXPPXPP 847
P PP PP
Sbjct: 451 PSAPIAPPLPAGMPAAPPLPP 471
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/40 (30%), Positives = 13/40 (32%)
Frame = +1
Query: 592 PPPXXXPPXPPXPNXTNPXXXXXXXXXXXPPPXPXPKRQT 711
P PP PP + P PPP P P T
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGT 263
Score = 26.2 bits (55), Expect = 7.8
Identities = 19/90 (21%), Positives = 22/90 (24%), Gaps = 4/90 (4%)
Frame = +2
Query: 596 PXXXPPXPXPXQTXXTPPXXXXXXPPXXPPPXPXPNXKPDXPP----XXXKTPGXXXPXX 763
P P P P PP PP + P+ PP P
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSK 289
Query: 764 PXXPXXXXXXXXXKTXPKXXKNXPPXPPXR 853
P P + PP PP R
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSR 319
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/62 (25%), Positives = 18/62 (29%)
Frame = +2
Query: 581 NXXXXPXXXPPXPXPXQTXXTPPXXXXXXPPXXPPPXPXPNXKPDXPPXXXKTPGXXXPX 760
N P PP + PP PP PPP P+ PP P
Sbjct: 333 NSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP--PPPRSAPSTGRQPPPLSSSRAVSNPPA 390
Query: 761 XP 766
P
Sbjct: 391 PP 392
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +1
Query: 550 PXXXXPPKXQXXXPPPPXXXPPXPP 624
P PP+ PPPP P PP
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPP 1718
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 4.5
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +1
Query: 565 PPKXQXXXPPPPXXXPPXPPXP 630
PP PPPP PP P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPP 26
Score = 26.2 bits (55), Expect = 7.8
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = +2
Query: 668 PPXXPPPXPXPNXKPDXPPXXXKTPG 745
P PPP P P +P P PG
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPPG 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,328,462
Number of Sequences: 5004
Number of extensions: 15540
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 561209266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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