Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_C23
         (987 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.58 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.58 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   9.4  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +2

Query: 776  PPXXNXKNPPXXXGGGXPPPXXXXXPXGPPPXXXPRXP 889
            PP  +   PP       PPP     P GPP    P  P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -2

Query: 752 PPPPPPXXXXXXAPPXGXXXXXXXGPPP 669
           PPPPPP       PP G        PPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPP 339



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -1

Query: 750 PPPPPXXXGPXXAPXGGXXXXXXXPPPP 667
           PPPPP        P G        PPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPP 340



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/52 (26%), Positives = 14/52 (26%)
 Frame = -1

Query: 822 PPPXXXGGFFXXXXGGGXXXXXXXPPPPPXXXGPXXAPXGGXXXXXXXPPPP 667
           PPP            G        PPPPP        P          PPPP
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = -2

Query: 782 GGGGXXXXXXPPPPPPXXXXXXAPPXGXXXXXXXGPPP 669
           G G       PPPPPP      + P          PPP
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -1

Query: 750 PPPPPXXXGPXXAPXGGXXXXXXXPPPP 667
           PPP P   GP   P          PPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/35 (37%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
 Frame = -3

Query: 769 PXXXXXPPPPPXXXG-XXXRPPXGXXXXGXXAPPP 668
           P     PPP P   G     PP G    G   PPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 565 GXGGXXXTXXPPPXXXGGXGGFG 497
           G GG       PP   GG GGFG
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFG 211



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -3

Query: 565 GXGGXXXTXXPPPXXXGGXGGFG 497
           G GG      P P   GG GGFG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGGFG 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.156    0.570 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,777,045
Number of Sequences: 5004
Number of extensions: 24051
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 509282430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)