Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_C21
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm rece...    30   2.4  
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ...    28   9.7  

>AF101318-2|AAK68599.1|  331|Caenorhabditis elegans Seven tm
           receptor protein 66 protein.
          Length = 331

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +2

Query: 245 LMISLKLQVNLKKTQQQFSLRNKTQLLQ*ILRLMIKKLNLKQKKVTEANP 394
           +  SLK+  N+KK  ++FS++N+    Q  + L+I+ L      +T A P
Sbjct: 214 IFCSLKMHFNMKKELEKFSVQNQNLQRQYFIALVIQALVPTMFLITPAVP 263


>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
           protein Y48G9A.4 protein.
          Length = 1115

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/36 (36%), Positives = 13/36 (36%)
 Frame = +3

Query: 699 PPPPPXKKXXFXXGXKIXXXXPPPXXGGGXXXXXPP 806
           PPPPP        G       PPP  GG      PP
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPPPPPP 596


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,041,307
Number of Sequences: 27780
Number of extensions: 314878
Number of successful extensions: 806
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)