Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_C20
(973 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0730 + 6505759-6508806 33 0.34
12_01_0714 + 6223269-6226250 33 0.34
02_04_0240 - 21194597-21194743,21195579-21195680,21195797-211958... 33 0.34
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 32 0.60
06_03_1212 + 28462459-28463283 31 1.8
06_03_1232 - 28583105-28583971 30 3.2
07_03_1150 - 24375859-24376050,24376173-24376283,24376488-243766... 29 4.2
11_02_0004 + 7260084-7260967,7261284-7263264,7263359-7263420,726... 29 5.6
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565... 29 5.6
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 29 5.6
03_02_0975 - 12836667-12836791,12838422-12838648,12838721-128387... 29 7.4
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482... 28 9.8
>12_01_0730 + 6505759-6508806
Length = 1015
Score = 33.1 bits (72), Expect = 0.34
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 245 LQAVKLDPAVLEAQITVETRKIDGTDSTQTQVSSQGSELPAEAVRVDFKKIVSMHETALL 424
L+ + L L I + ++D +S + E+P E ++F +++ L+
Sbjct: 875 LRGLNLSHNALTGPIPSQFGRLDQLESLDLSFNELSGEIPKELASLNFLSTLNLANNTLV 934
Query: 425 SLTPDQYQF 451
PD YQF
Sbjct: 935 GRIPDSYQF 943
>12_01_0714 + 6223269-6226250
Length = 993
Score = 33.1 bits (72), Expect = 0.34
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +2
Query: 245 LQAVKLDPAVLEAQITVETRKIDGTDSTQTQVSSQGSELPAEAVRVDFKKIVSMHETALL 424
L+ + L L I + ++D +S + E+P E ++F +++ L+
Sbjct: 853 LRGLNLSHNALTGPIPSQFCRLDQLESLDLSFNELSGEIPKELASLNFLSTLNLSNNTLV 912
Query: 425 SLTPDQYQF 451
PD YQF
Sbjct: 913 GRIPDSYQF 921
>02_04_0240 -
21194597-21194743,21195579-21195680,21195797-21195875,
21195921-21196043,21196135-21196193,21196453-21196974,
21197434-21198177,21198426-21198506
Length = 618
Score = 33.1 bits (72), Expect = 0.34
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = -3
Query: 689 HNLNNRSSVAILMCELVPVAPRAAAEPSKYQGTSPDRAHPSEHAFCTMTLTPHFSYRRRT 510
HN++ A+ + V AP ++ EPS +S ++ H +T P FS +
Sbjct: 119 HNIHEHKLPAVSSEDPVASAPSSSFEPSTGVSSSGEKKCQDPHGLGYLTFNPLFSQITGS 178
Query: 509 QNVFVDRFASDE 474
QN+ ++ SD+
Sbjct: 179 QNIQLEGPVSDQ 190
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 32.3 bits (70), Expect = 0.60
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Frame = -3
Query: 641 VPVAPRAAAEPSKYQGTSPDRAHPSEHAFCTMTLTPHFS--YRRRTQNVFVDRFASDEEL 468
+P+ P +AA P +P P+ A LT + + Y + ++ F D+ EE
Sbjct: 157 MPLGPASAAAPPPQAAAAPPAQPPAGGATAGQKLTTNDALVYLKAVKDKFQDKREKYEEF 216
Query: 467 RRKLEGTDTDQESRRGVLSRALTLFS 390
+ +++ GV+ R TLF+
Sbjct: 217 LEVMRDFKSERIDTNGVIIRVKTLFN 242
>06_03_1212 + 28462459-28463283
Length = 274
Score = 30.7 bits (66), Expect = 1.8
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -3
Query: 662 AILMCELVPVAPRAAAEPSKYQGTSPDRAHPSEHAFCTMTLTPHFSYRRRTQNVFVDRFA 483
A+L ELVP P+ A Q R HPSE T ++R ++ + A
Sbjct: 71 ALLTLELVPAMPKMLASTDLAQDVGALRNHPSERVRGLATGIVR-AWRASVKDELLKAAA 129
Query: 482 SDEELRRKLEGTDTD 438
+ E+L + LE + D
Sbjct: 130 AMEKLSQALEPDEAD 144
>06_03_1232 - 28583105-28583971
Length = 288
Score = 29.9 bits (64), Expect = 3.2
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = -3
Query: 662 AILMCELVPVAPRAAAEPSKYQGTSPDRAHPSEHAFCTMTLTPHFSYRRRTQNVFVDRFA 483
A+L ELVP P+ A Q R HPSE ++ + +R ++ + A
Sbjct: 71 ALLTLELVPAMPKMLASTDLAQDVGALRNHPSERV-RSLAIGIVRGWRASVKDELLKAAA 129
Query: 482 SDEELRRKLEGTDTD 438
+ E+L + +E + D
Sbjct: 130 AMEKLSQAMEPDEAD 144
>07_03_1150 -
24375859-24376050,24376173-24376283,24376488-24376655,
24376850-24377451,24377546-24377648,24378461-24378610,
24379918-24379956
Length = 454
Score = 29.5 bits (63), Expect = 4.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 230 LKKDALQAVKLDPAVLEAQITVETRKIDGTDSTQT--QVSSQGSELPAEAVRVDFK 391
LKK ALQ KL+ L++Q +E+ K+D T Q S G + A+ D K
Sbjct: 163 LKKAALQIEKLENVNLDSQCEIESLKLDLTTLEQRLFDADSFGQHVSADKAIADNK 218
>11_02_0004 +
7260084-7260967,7261284-7263264,7263359-7263420,
7263614-7263686
Length = 999
Score = 29.1 bits (62), Expect = 5.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 279 SNTAGSSLTACKASFFKMHPLSKNSGCFLIYADADGTISSKVCPTE 142
+N A S T CK +KM PLS+ + L G ++ CP++
Sbjct: 332 NNIAESCCTPCKGFVYKMEPLSRQNSEILFVKRIFG--ANSTCPSQ 375
>11_01_0687 -
5651002-5651453,5651535-5651951,5652621-5653338,
5654106-5654417,5654482-5654814
Length = 743
Score = 29.1 bits (62), Expect = 5.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 250 SC*TGSRGIGGTNNCGNEKNRWNRFYTNSSFFTRK 354
+C G G GG N+ NRW R + S + R+
Sbjct: 445 TCSGGHTGFGGNNSARESNNRWVRSNSTVSIYFRR 479
>06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 29.1 bits (62), Expect = 5.6
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -1
Query: 649 VSSSPWPHARQRNPLSTRALHPTAPILQSMRSVP 548
V+ +P PH + R P RA HPTAP+ Q R +P
Sbjct: 1794 VARAPAPHLQFRLP---RA-HPTAPVNQQQRQLP 1823
>03_02_0975 -
12836667-12836791,12838422-12838648,12838721-12838785,
12839292-12839407,12839514-12839771,12839937-12840195,
12840308-12840412
Length = 384
Score = 28.7 bits (61), Expect = 7.4
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -3
Query: 692 PHNLNNRSSVAILMCELVPVAPRAAAEPSKYQGTSPDRAHPSEHAFCTMTLTPHF 528
P N++N + + + ++V PR+ PS + G D + T TPH+
Sbjct: 329 PENVSNHTKIWSELSDVVSDNPRSQHHPSNWVGADEDDDDDEDEELFVQT-TPHY 382
>03_01_0658 +
4818401-4818540,4818605-4819201,4819694-4819949,
4820038-4820723,4821009-4821147,4821378-4821514,
4821805-4822077,4822175-4822382,4822660-4822731,
4823230-4823460,4824269-4824532,4825127-4825268,
4825355-4825467
Length = 1085
Score = 28.3 bits (60), Expect = 9.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 667 LWQY*CVSSSPWPHARQRNPLSTRALHPTAPI 572
+++Y C++ SPWP + + L R +H T I
Sbjct: 24 VFKYVCIALSPWPKLWRFDMLVLRKIHSTGAI 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,678,979
Number of Sequences: 37544
Number of extensions: 384585
Number of successful extensions: 1028
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2823252340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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