Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_C20
         (973 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-37|AAF59579.1|  107|Caenorhabditis elegans Hypothetical...    31   0.94 
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    30   2.2  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    30   2.2  
Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z81476-5|CAB03916.1|  332|Caenorhabditis elegans Hypothetical pr...    29   5.0  

>AC024817-37|AAF59579.1|  107|Caenorhabditis elegans Hypothetical
           protein Y54G2A.19 protein.
          Length = 107

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = -3

Query: 614 EPSKYQGTSPDRAHPSEHAFCTMTLTPHFS-YRRRT--QNVFVDRFASDEELRRKLEGTD 444
           EP +    S  R HPS       + +   S Y  RT  +N  +D   SDEELR+ +EG  
Sbjct: 39  EPQRDSHRSDTRGHPSTGRKSHNSTSAQSSVYNSRTDPENAAMD---SDEELRKMMEGFV 95

Query: 443 TDQES 429
            D+ES
Sbjct: 96  DDEES 100


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 500  RHFECAFCKKNGESVSWYRTHALKDGRGRV 589
            R F+CA+C K   SV  Y  H    G GRV
Sbjct: 1250 RRFQCAYCIKVFVSVGEYYEHECASGGGRV 1279


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 500  RHFECAFCKKNGESVSWYRTHALKDGRGRV 589
            R F+CA+C K   SV  Y  H    G GRV
Sbjct: 1250 RRFQCAYCIKVFVSVGEYYEHECASGGGRV 1279


>Z81513-6|CAB04176.1|  341|Caenorhabditis elegans Hypothetical
           protein F26D2.7 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -2

Query: 306 FLVSTVICA-SNTAGSSLTACKASFFKMHPLSKNSGCFLIYADADGTISSK-VCPT 145
           F V+T++   +N   +  T    SFF+++P+S N    LI ++    I SK VC T
Sbjct: 264 FFVTTLLSPYTNMEINWQTGWLCSFFELYPISDNIAFMLIVSEYRNYIKSKLVCKT 319


>Z81476-5|CAB03916.1|  332|Caenorhabditis elegans Hypothetical
           protein C25F9.8 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 500 RHFECAFCKKNGESVSWYRTHALKDGRGRVKC 595
           R FE   C KNG +  WY  +   +G+  V+C
Sbjct: 223 RRFEDLLCVKNGTTFDWYFGNLKLEGQITVEC 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,283,629
Number of Sequences: 27780
Number of extensions: 351330
Number of successful extensions: 1044
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2521399358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)