Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_C19
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    44   3e-05
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    32   0.097
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    28   1.6  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   2.1  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
 Frame = +1

Query: 610 WKQYHRLEDIYGFMDYLAKTYPSIISVKSIGKSFEGRDLKILRISNGK--SDN------- 762
           +K Y  LE I  ++  +A  Y  +  +  +G + EGR +  L++ NG+  SDN       
Sbjct: 180 FKSYQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKL-NGRHPSDNGEKIRNK 238

Query: 763 KAVFIDGGIHAREWI 807
           K + I GG HAREWI
Sbjct: 239 KVIIIQGGSHAREWI 253


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 32.3 bits (70), Expect = 0.097
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 631 EDIYGFMDYLAKTYPSIISVKSIGKSFEGRDLKILRISNGKSDNKAVFID 780
           +D   F   +  +Y S I VKS GKS +G     +R   G  D+  VF+D
Sbjct: 498 DDEEAFEKQVTSSYSSPIKVKSQGKSSKGSSGLDVREHEGSDDDAEVFVD 547


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 361 SGARQVIGRLRRRNLISTWGGNQSSVDILIKPNVVENITRVFKRESIDYNVV 516
           S A  + G L+  NLI+ W  N+ ++D     +  E++ + F  E+  +N+V
Sbjct: 171 SEACSLAGHLKLSNLIAVWDNNKITIDGATSMSFDEDVEKRF--EAYGWNIV 220


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 628  LEDIYGFMDYLAKTYPSIISVKSIGKSFEGRDLKILRISNGKS 756
            + D+  F D    + PSI +V SI  +  G DL I +I  G S
Sbjct: 1356 IPDVRTFQDNFIDSLPSIWNVVSITINNSGEDLFISKIRKGHS 1398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,207
Number of Sequences: 5004
Number of extensions: 61731
Number of successful extensions: 173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)