Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_C18
         (916 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ370036-1|ABD18597.1|  103|Anopheles gambiae putative TIL domai...    24   7.4  
DQ182013-1|ABA56305.1|   75|Anopheles gambiae G(alpha)c protein.       24   7.4  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    24   7.4  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    24   7.4  

>DQ370036-1|ABD18597.1|  103|Anopheles gambiae putative TIL domain
           protein protein.
          Length = 103

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 726 PSVRPSCSKPXP 761
           P V P+CSKP P
Sbjct: 49  PCVEPTCSKPEP 60


>DQ182013-1|ABA56305.1|   75|Anopheles gambiae G(alpha)c protein.
          Length = 75

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 200 YIDEFGQTTTXMQ*KKCFICEICDAIALFVT 292
           ++D  GQ T   +  KCF C +   + L  T
Sbjct: 13  FVDVGGQRTQRQKWTKCFDCSVTSILFLVST 43


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 561 SHVXSCVIPLILWITVLPPLSELIPLAA 478
           S + S V+ L+L   +LPP S ++PL A
Sbjct: 269 SILLSLVVFLLLVSKILPPTSLVLPLIA 296


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 592 YGSWPFAGLLLTCXFLRYPPDSVDN 518
           +GSW + G ++    L+  PDS DN
Sbjct: 166 FGSWTYDGYMVDLRHLQQTPDS-DN 189


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 703,138
Number of Sequences: 2352
Number of extensions: 12545
Number of successful extensions: 65
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 99228240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)