Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_C17
(932 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 120 1e-27
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 38 0.009
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 36 0.035
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 36 0.046
06_01_1179 + 10137652-10138038 31 0.99
08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538... 29 4.0
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 29 4.0
05_07_0290 + 29016410-29018920 29 5.3
10_08_0898 + 21424379-21424792,21424974-21425723 29 7.0
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 29 7.0
02_01_0293 + 1955439-1956457,1957002-1957322,1957405-1957411,195... 29 7.0
01_02_0074 + 10869546-10871373,10871449-10872077 29 7.0
12_02_0981 - 25027336-25027596,25028017-25028361,25028681-250288... 28 9.2
06_01_0837 - 6355315-6355342,6356185-6356361,6356579-6356662,635... 28 9.2
02_01_0251 - 1652356-1652522,1652564-1652608,1652658-1652733,165... 28 9.2
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 120 bits (290), Expect = 1e-27
Identities = 55/152 (36%), Positives = 91/152 (59%), Gaps = 4/152 (2%)
Frame = +2
Query: 272 TAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDY 451
T + P T +++I +K+ G ++A DT SYGS R++ R+ V L+G G++
Sbjct: 359 TQRTQYPYVTGSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEF 418
Query: 452 ADFQYLKDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD 631
+DFQ + + + + + DG L P+ +H +LTRV+YN+R+K DPLWNS V+ G++
Sbjct: 419 SDFQEILRYLDELTLSDHMWDDGNSLGPKEVHSYLTRVMYNRRNKFDPLWNSLVIGGVKK 478
Query: 632 G----EPFLGAVDKLGTAYEDAVISNGLGAYM 715
G E +LG V+ +GT +E+ I+ G G +M
Sbjct: 479 GPKGEEKYLGMVNMIGTHFEENHIATGFGNHM 510
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 38.3 bits (85), Expect = 0.009
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +2
Query: 305 TTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQ 484
TT++GV +D G V+A D+ S G R ++ ++ D + + G AD Q + D ++
Sbjct: 26 TTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYVR 85
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 36.3 bits (80), Expect = 0.035
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +2
Query: 305 TTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQ 484
TT++GV +D G V+A D+ S G R ++ ++ D + + G AD Q + + ++
Sbjct: 26 TTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYVR 85
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 35.9 bits (79), Expect = 0.046
Identities = 16/67 (23%), Positives = 34/67 (50%)
Frame = +2
Query: 293 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 472
+ T TT++G+ F G V+ DT + G + ++C ++ + I G AD + +
Sbjct: 35 LKTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 94
Query: 473 DIIQQKI 493
D++ ++
Sbjct: 95 DMVSSQL 101
>06_01_1179 + 10137652-10138038
Length = 128
Score = 31.5 bits (68), Expect = 0.99
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 723 ESPM*APSPFEITASSYAVPNLSTAPRKGSPS*IPATT 610
ESP PS A+ P +++APRK P+ P TT
Sbjct: 28 ESPSPKPSKSTAAATPAKAPTVASAPRKAGPAAAPTTT 65
>08_01_0612 +
5378190-5378251,5378926-5379244,5379381-5379671,
5380520-5380768,5380843-5380967,5381487-5381585,
5381668-5382352
Length = 609
Score = 29.5 bits (63), Expect = 4.0
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Frame = +3
Query: 228 MLPQLLHPGTVYRILQLTQRAPSRPLQRSSEL-SLTR-------DVLSPVTHWARTGHWP 383
M+ ++ G+ IL+ TQR+ PL R + L +L R +++S + W RT HW
Sbjct: 80 MMREIEESGSAVSILK-TQRSKKEPLPRDAVLGTLMRFKQLKKWNLVSEILEWLRTQHWW 138
Query: 384 GF 389
F
Sbjct: 139 NF 140
>06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 29.5 bits (63), Expect = 4.0
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +2
Query: 152 MGDTMNPTPLWQNGPS---PGAFY-NFPGNASTIAPSRHGVQDFTAHSAS 289
MG + PLWQ GP PG Y FPGN + VQ++ S S
Sbjct: 1059 MGQALAGVPLWQLGPESRHPGVPYIVFPGNVGDNSALAKVVQNWACPSRS 1108
>05_07_0290 + 29016410-29018920
Length = 836
Score = 29.1 bits (62), Expect = 5.3
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Frame = +2
Query: 398 PRVMKVNDLILLGC-GGDYADFQYL-----KDIIQQKIID-----ERCVGDGLQLKPRSL 544
P V+ LI C G+Y D Y KD +Q ++ C G LQ K + L
Sbjct: 426 PNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKEL 485
Query: 545 HCWLTRVLYN 574
HC+ R Y+
Sbjct: 486 HCFALRRAYD 495
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 146 AFMGDTMNPTPLWQNGPSPGAFYNFPGNASTIAPSRHG 259
A MGD M L +PGA FP +A+ A HG
Sbjct: 62 AAMGDAMRVDDLLDLSNTPGAHDFFPASAAAAAAGDHG 99
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 747 YPLRPSAEESPM*APSPFEITASSYAVPNLSTAPRKGSP 631
+PL PS+ S + PS ++ ASS + P ++A SP
Sbjct: 59 FPLSPSSSSSFVDPPSYADVAASSSSSPRSASASASASP 97
>02_01_0293 +
1955439-1956457,1957002-1957322,1957405-1957411,
1957954-1958041,1958143-1958324,1958508-1958644,
1958790-1958856,1959132-1959246,1959390-1959501,
1960420-1960495,1960576-1960758,1961166-1961326,
1961463-1961532,1962721-1962928,1963015-1963304,
1963388-1963509,1963605-1963749,1964040-1964113,
1964464-1964911
Length = 1274
Score = 28.7 bits (61), Expect = 7.0
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = +3
Query: 261 YRILQLTQRAPSRPLQRSSE----LSLTRDVLSPVTHWART 371
+R+LQ +RAP R L+ SS L L RD +PV WA T
Sbjct: 564 FRVLQKPERAPIRALRASSSGRYLLILFRD--APVEVWAMT 602
>01_02_0074 + 10869546-10871373,10871449-10872077
Length = 818
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 200 PGAFYNFPGNASTIAPSRHGVQ--DFTAHSASPITTTTTVIG 319
PG Y F G A + P HG+ +FT SA+ T +G
Sbjct: 642 PGRTYKFYGGADVLYPFGHGLSYTNFTYASATAAAPVTVKVG 683
>12_02_0981 -
25027336-25027596,25028017-25028361,25028681-25028827,
25028906-25029970
Length = 605
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +2
Query: 449 YADFQYLKDIIQQKIIDERCVGD----GLQLKPRSLHCWLTRVLY 571
+AD++ L D +++D V D G PR LH W R LY
Sbjct: 42 HADWRGLPDAAVSRVLDRLPVVDLFRLGYLFSPRWLHIWRARPLY 86
>06_01_0837 -
6355315-6355342,6356185-6356361,6356579-6356662,
6356989-6357542,6358086-6358322
Length = 359
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 401 RVMKVNDLILLGCGGDYADFQYLKDIIQQKI 493
RVM V+DL+LLG YAD ++ ++ + K+
Sbjct: 48 RVMMVSDLMLLGSDATYAD-RFFRNHVMSKL 77
>02_01_0251 -
1652356-1652522,1652564-1652608,1652658-1652733,
1652976-1653041,1653120-1653238,1653334-1653508,
1653604-1653881,1654253-1654436,1654455-1654550,
1654872-1655012,1655091-1655123
Length = 459
Score = 28.3 bits (60), Expect = 9.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 661 FINSSEKGFTILNTGDHVAVPERIHLAPLVVED 563
F+ EKG+ +LN H E++ AP++ +D
Sbjct: 105 FLAPQEKGYFVLNDYFHFVDEEQVQPAPVIAQD 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,618,881
Number of Sequences: 37544
Number of extensions: 469989
Number of successful extensions: 1396
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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