Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_C17
(932 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 119 3e-27
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 31 0.89
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 31 0.89
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 31 1.6
Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical pr... 30 2.7
AC084155-1|AAG23361.2| 352|Caenorhabditis elegans Hypothetical ... 29 3.6
AL132841-2|CAB60332.1| 469|Caenorhabditis elegans Hypothetical ... 29 4.8
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 119 bits (286), Expect = 3e-27
Identities = 58/158 (36%), Positives = 101/158 (63%), Gaps = 8/158 (5%)
Frame = +2
Query: 266 DFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGG 445
D + +P T T+VI +++ G V+ D + SYG +AR+++ R KVND +L+ GG
Sbjct: 5 DEVQRTLNPTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGG 64
Query: 446 DYADFQYLKDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI 625
D+ADF +L+++I+++++ + + P++LH +LT +LY KR KM+P+WN+ VVAG+
Sbjct: 65 DHADFHWLQNVIERQVLLWKRFDQ--DIGPKALHGYLTSLLYAKRCKMNPVWNTLVVAGV 122
Query: 626 QDGE--------PFLGAVDKLGTAYEDAVISNGLGAYM 715
++ E PF+G + + G AY+ I+ GLGA++
Sbjct: 123 EEEEKNNKETSTPFIGVITQKGCAYQVKHIATGLGAFL 160
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 31.5 bits (68), Expect = 0.89
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = +2
Query: 299 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 475
+T + G F ++A DT + + RD ++ +ND I+L G Y D LK
Sbjct: 53 STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109
Query: 476 IIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD-GEPFLGA 652
++Q ++ R + L+R LY +R P + ++AGI + G+ + +
Sbjct: 110 VLQSRLHKYR-FDYRSDMSVDLCAELLSRNLYYRR--FFPYYTGAILAGIDEHGKGAVFS 166
Query: 653 VDKLG 667
D +G
Sbjct: 167 YDPIG 171
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 31.5 bits (68), Expect = 0.89
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Frame = +2
Query: 299 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 475
+T + G F ++A DT + + RD ++ +ND I+L G Y D LK
Sbjct: 53 STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109
Query: 476 IIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD-GEPFLGA 652
++Q ++ R + L+R LY +R P + ++AGI + G+ + +
Sbjct: 110 VLQSRLHKYR-FDYRSDMSVDLCAELLSRNLYYRR--FFPYYTGAILAGIDEHGKGAVFS 166
Query: 653 VDKLG 667
D +G
Sbjct: 167 YDPIG 171
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 30.7 bits (66), Expect = 1.6
Identities = 25/82 (30%), Positives = 36/82 (43%)
Frame = +2
Query: 230 ASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVM 409
AST +P Q A A + T+I ++ G V+ D L S L PR+
Sbjct: 12 ASTFSPDGRIFQVEYAQKA--VDNAGTMIAIRGKNGVVVVADKLIS-SKLYTDNANPRMF 68
Query: 410 KVNDLILLGCGGDYADFQYLKD 475
VND + + G+Y D LK+
Sbjct: 69 NVNDNVGVAVAGNYPDGFALKN 90
>Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical
protein C06C3.3 protein.
Length = 576
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 189 TDRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAP 293
T ++ +H+I+FL+ L LL T R L TQ P
Sbjct: 37 TRKQFKHWIVFLDALTDLLRTATAVRRLFTTQGIP 71
>AC084155-1|AAG23361.2| 352|Caenorhabditis elegans Hypothetical
protein Y45G5AM.6 protein.
Length = 352
Score = 29.5 bits (63), Expect = 3.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 611 RSCSREDPSCSSCCRGH 561
R CS ++P+C S C GH
Sbjct: 117 RECSEKNPNCGSSCEGH 133
>AL132841-2|CAB60332.1| 469|Caenorhabditis elegans Hypothetical
protein Y15E3A.4 protein.
Length = 469
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 640 GFTILNTGDHVAVPERIHLAPLVVEDTSQPAVQ 542
GF + +TG VAVP +HLA ++ + +Q
Sbjct: 283 GFAVNHTGYFVAVPRALHLAFKIISGVASDRIQ 315
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,773,213
Number of Sequences: 27780
Number of extensions: 384772
Number of successful extensions: 1194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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