Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_C15
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    28   2.1  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    27   2.8  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   4.9  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    26   8.6  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    26   8.6  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    26   8.6  

>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -3

Query: 494 FFQVLVPTHQFHEYLFEISHGVHILIGGEDAGVGLGRFAVHRHRTARQQ-QAASNEYIEY 318
           F  +  PTH F +YL   S     LI    + V +   + H + + R   +  S +Y E+
Sbjct: 146 FMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIMAADSKHNYSSGRPSIRLQSTQYFEH 205

Query: 317 DFAIASVV 294
              I  ++
Sbjct: 206 GLFILDLI 213


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 678 PARSPAPGCPSADVRSPGPA 619
           PA  PAPG P  + R P PA
Sbjct: 521 PAGGPAPGYPGMNARGPVPA 540


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -2

Query: 690 SRTLPARSPAPGCPSADVRSPGPAARMEARIRYRST--VQSCAPA*CAVRDRSLSS 529
           S T+P  SPA G P+    +P P A   A   Y ST    S  P+  ++R  SL++
Sbjct: 300 SATVPI-SPARGFPTTSAYNPAPPAYGMANPAYGSTGIRSSSIPSSGSIRSPSLTT 354


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 371 RHRTARQQQAASNEYIEYDFA 309
           R RT  +Q   + +YIEYDF+
Sbjct: 43  RKRTFDEQSEITKDYIEYDFS 63


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 424 SSLAEKMQVLVLGDSPSIDTEPPGSSRPPAMSTS 323
           SSL + M V    DSP ++ E  G S  P M ++
Sbjct: 475 SSLDDLMSVTCFRDSPELNHESSGYSSAPLMPSN 508


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 264 CRLRRDRHRPAPDPCTRASRKPFG 193
           CR+  DR  P  D C  A  K FG
Sbjct: 261 CRVDLDREGPIHDVCWNADSKEFG 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,336,755
Number of Sequences: 5004
Number of extensions: 67273
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)