Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_C14
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347...    29   3.2  
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541...    29   3.2  

>03_06_0466 -
           34134138-34134278,34134355-34134481,34134558-34134713,
           34135831-34135835
          Length = 142

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +1

Query: 37  LRFKLWVKVANVXLLALYKRKRXXPXS 117
           +RFK+ VKV+ V LLAL+K K+  P S
Sbjct: 117 VRFKV-VKVSGVSLLALFKEKKEKPRS 142


>01_06_1253 -
           35753546-35753686,35753759-35753885,35753970-35754125,
           35754761-35754853,35757132-35757265,35757339-35757465,
           35757550-35757705,35758321-35758325
          Length = 312

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +1

Query: 37  LRFKLWVKVANVXLLALYKRKRXXPXS 117
           +RFK+ VKV+ V LLAL+K K+  P S
Sbjct: 287 VRFKV-VKVSGVSLLALFKEKKEKPRS 312



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1

Query: 37  LRFKLWVKVANVXLLALYKRKRXXP 111
           +RFK+ VKV+ V LLAL+K K+  P
Sbjct: 117 VRFKV-VKVSGVSLLALFKEKKEKP 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,535,484
Number of Sequences: 37544
Number of extensions: 71390
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)