Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_C13
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   6.7  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   6.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   8.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   8.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.8  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 352 ECVLPTGSCCLPDS 393
           +C +  GSC  PDS
Sbjct: 47  DCFIDAGSCLTPDS 60


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 352 ECVLPTGSCCLPDS 393
           +C +  GSC  PDS
Sbjct: 47  DCFIDAGSCLTPDS 60


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = +2

Query: 566 LPHTGIHCHPGTDTETNNE 622
           LP  G HC PG   +   +
Sbjct: 242 LPSGGCHCKPGYQADVEKQ 260


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 187 GLTTICSTSCSRAVLGSSVSEPKN 116
           G +  CS S S+   GSS+S   N
Sbjct: 16  GYSNTCSNSQSQRSSGSSISRNSN 39


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
 Frame = +2

Query: 554 CHCXLPHTGIHCHPG-TDTETNNEP 625
           CH  L H G H  PG  D     +P
Sbjct: 274 CHTGLGHYGHHPDPGEVDLPPETQP 298


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 187 GLTTICSTSCSRAVLGSSVSEPKN 116
           G +  CS S S+   GSS+S   N
Sbjct: 16  GYSNTCSNSQSQRSSGSSISRNSN 39


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 245 QRLVGCRKWRQWQRAL 198
           + L+G R+W+Q+Q  L
Sbjct: 38  EELMGRRRWKQYQDTL 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,996
Number of Sequences: 438
Number of extensions: 2571
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)