Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_C10
(899 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces... 142 8e-35
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe... 142 8e-35
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb... 142 8e-35
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 49 1e-06
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 27 4.8
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 27 4.8
SPAC1556.06.2 |meu2|SPAC1556.06b, SPAC1556.06|sequence orphan|Sc... 26 6.3
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 26 6.3
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 8.4
>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 142 bits (343), Expect = 8e-35
Identities = 66/74 (89%), Positives = 72/74 (97%)
Frame = +1
Query: 214 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVY 393
ITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKTVT++DVVY
Sbjct: 30 ITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDVVY 89
Query: 394 ALKRQGRTLYGFGG 435
+LKRQGRT+YGFGG
Sbjct: 90 SLKRQGRTIYGFGG 103
>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 103
Score = 142 bits (343), Expect = 8e-35
Identities = 66/74 (89%), Positives = 72/74 (97%)
Frame = +1
Query: 214 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVY 393
ITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKTVT++DVVY
Sbjct: 30 ITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDVVY 89
Query: 394 ALKRQGRTLYGFGG 435
+LKRQGRT+YGFGG
Sbjct: 90 SLKRQGRTIYGFGG 103
>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 142 bits (343), Expect = 8e-35
Identities = 66/74 (89%), Positives = 72/74 (97%)
Frame = +1
Query: 214 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVY 393
ITKPAIRRLARRGGVKRIS L+YEETR VLK+FLENVIRDAVTYTEHAKRKTVT++DVVY
Sbjct: 30 ITKPAIRRLARRGGVKRISALVYEETRAVLKLFLENVIRDAVTYTEHAKRKTVTSLDVVY 89
Query: 394 ALKRQGRTLYGFGG 435
+LKRQGRT+YGFGG
Sbjct: 90 SLKRQGRTIYGFGG 103
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 48.8 bits (111), Expect = 1e-06
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +1
Query: 229 IRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 408
IR+LA K+I+G + EE ++F + + D + +HA RKT+ DVV +KRQ
Sbjct: 391 IRKLANSYSQKKIAGSVIEELTTASELFFKQIANDLSAFADHAHRKTIDTQDVVLLMKRQ 450
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 26.6 bits (56), Expect = 4.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 249 RWSETYLRSYIRRDPRRSQSVPRKRDPR 332
+++ +R++IR D RS+ +K DPR
Sbjct: 273 KYASQIMRAFIRIDFERSKKTKKKHDPR 300
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 26.6 bits (56), Expect = 4.8
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 169 ALNVTGRCCVITSXXITKPAIRRLARRGGVKRISGLIYEETRGVLKV 309
AL TGR CVI + ++ +R L +R IS L+Y E + +V
Sbjct: 91 ALWATGRTCVIFNQIWSQQVVRVLVKR---LNISDLLYHEYKPKFEV 134
>SPAC1556.06.2 |meu2|SPAC1556.06b, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 99
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 743 IKMRPXKGPLFVCLYSRTEKFNNN*TNQRHLRLIYNINDSKKFLKHV 603
+ RP LF C Y T+K +HL+ N+ + KK +KH+
Sbjct: 59 VNARPANLDLFPCCYETTDK------RSKHLK---NMLNKKKLIKHI 96
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 743 IKMRPXKGPLFVCLYSRTEKFNNN*TNQRHLRLIYNINDSKKFLKHV 603
+ RP LF C Y T+K +HL+ N+ + KK +KH+
Sbjct: 736 VNARPANLDLFPCCYETTDK------RSKHLK---NMLNKKKLIKHI 773
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.8 bits (54), Expect = 8.4
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 277 IYEETRGVLKVFLEN-VIRDAVTYTEHAKRKTVTAMDVVYALKRQG 411
I +ET VL E+ I D+ T T+ KRK V ++Y R+G
Sbjct: 132 ITDETPKVLSEIKEHGTISDSKTLTDLKKRKLVERNKIMYFSLRKG 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,038
Number of Sequences: 5004
Number of extensions: 54381
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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