Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_C09
         (1049 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           32   0.66 
01_03_0005 + 11568545-11569119,11569179-11569191                       30   2.7  

>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 32.3 bits (70), Expect = 0.66
 Identities = 18/58 (31%), Positives = 18/58 (31%)
 Frame = +3

Query: 714 PPXXXVGPGXXAPPPXXXXPEXXGXGXWVVXXTPPGXAVXXARGXAGPRGXPSLGPAG 887
           PP     P   APPP    P   G G       PP           GP   P  G AG
Sbjct: 321 PPPPPAHPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAG 378


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 18/58 (31%), Positives = 20/58 (34%), Gaps = 3/58 (5%)
 Frame = -2

Query: 877 PKEGXPRGPAFPRAXXTAXPGGVXXTTQXPXP---XXSGXXXXGGGASXPGPTXXXGG 713
           P    P  P++P        GG    T  P P      G    GGG   P PT   GG
Sbjct: 65  PTPQCPPPPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPPPTGGGGG 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,033,994
Number of Sequences: 37544
Number of extensions: 192643
Number of successful extensions: 392
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3106134136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)