Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_C09
(1049 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 32 0.78
Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical pr... 31 1.0
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 30 2.4
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 30 3.2
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 30 3.2
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 30 3.2
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 30 3.2
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 4.2
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 9.7
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 9.7
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 9.7
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 9.7
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 31.9 bits (69), Expect = 0.78
Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 1/59 (1%)
Frame = -2
Query: 886 PAGPKEGXPRGPAFPRAXXTAXPGGVXXTTQXP-XPXXSGXXXXGGGASXPGPTXXXGG 713
PAGP P GPA P A P P P +G G GP GG
Sbjct: 222 PAGPGPAGPPGPAGPPGPDGASPTAAPGAAGPPGPPGPAGAPGPDGNPGTAGPPGKAGG 280
Score = 31.1 bits (67), Expect = 1.4
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Frame = -2
Query: 892 ATPAGPKEGXPRGPAFPR----AXXTAXPGGVXXTTQXPXPXXSGXXXXGGGASXPGP 731
A P+ P P GPA P A T P G + P P G G A PGP
Sbjct: 182 AAPSPPGPPGPPGPAGPAGNDGAAGTPGPDGPAGESTYPEPAGPGPAGPPGPAGPPGP 239
>Z70208-2|CAA94136.1| 304|Caenorhabditis elegans Hypothetical
protein F54B11.2 protein.
Length = 304
Score = 31.5 bits (68), Expect = 1.0
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Frame = -2
Query: 892 ATPAGPKEGXPRGPAFPR----AXXTAXPGGVXXTTQXPXPXXSGXXXXGGGASXPGP 731
A P+ P P GPA P A T P G + P P G G A PGP
Sbjct: 181 AAPSPPGPPGPSGPAGPAGNDGAAGTPGPDGPAGESTYPEPAAPGPAGPPGPAGPPGP 238
Score = 29.5 bits (63), Expect = 4.2
Identities = 18/59 (30%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Frame = -2
Query: 886 PAGPKEGXPRGPAFPRAXXTAXPGGVXXTTQXP-XPXXSGXXXXGGGASXPGPTXXXGG 713
PA P P GPA P A P P P +G G GP GG
Sbjct: 221 PAAPGPAGPPGPAGPPGPDGASPTAAPGAAGPPGPPGPAGAPGPDGNPGTAGPPGKAGG 279
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 30.3 bits (65), Expect = 2.4
Identities = 26/85 (30%), Positives = 26/85 (30%)
Frame = +3
Query: 234 QXGXPRXXAXXPVPXRXEXGRGPPRXRXVXPXXGGPGEXRXXXGGRRPXXXXGXXXXGAP 413
Q G P A P G G P P GGPG G G G P
Sbjct: 383 QSGPPGAFAPPPSAFGAPQGPGGPGGYG-PPPPGGPGAP-----GSYGPPQGGPGGFGPP 436
Query: 414 PXPGXXXEGPPXXXXWXXGTPPRXA 488
P G GPP G PP A
Sbjct: 437 PPGGPGAYGPPPTGFPPVGAPPPGA 461
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.9 bits (64), Expect = 3.2
Identities = 20/59 (33%), Positives = 22/59 (37%)
Frame = -2
Query: 892 ATPAGPKEGXPRGPAFPRAXXTAXPGGVXXTTQXPXPXXSGXXXXGGGASXPGPTXXXG 716
A P+GP P GPA P A PG + P G G A PGP G
Sbjct: 177 AGPSGPGPAGPPGPAGP-AGNDGAPGAPGGPGE-PGASEQGGPGEPGPAGPPGPAGPAG 233
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.9 bits (64), Expect = 3.2
Identities = 20/59 (33%), Positives = 22/59 (37%)
Frame = -2
Query: 892 ATPAGPKEGXPRGPAFPRAXXTAXPGGVXXTTQXPXPXXSGXXXXGGGASXPGPTXXXG 716
A P+GP P GPA P A PG + P G G A PGP G
Sbjct: 177 AGPSGPGPAGPPGPAGP-AGNDGAPGAPGGPGE-PGASEQGGPGEPGPAGPPGPAGPAG 233
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.9 bits (64), Expect = 3.2
Identities = 20/59 (33%), Positives = 22/59 (37%)
Frame = -2
Query: 892 ATPAGPKEGXPRGPAFPRAXXTAXPGGVXXTTQXPXPXXSGXXXXGGGASXPGPTXXXG 716
A P+GP P GPA P A PG + P G G A PGP G
Sbjct: 177 AGPSGPGPAGPPGPAGP-AGNDGAPGAPGGPGE-PGASEQGGPGEPGPAGPPGPAGPAG 233
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.9 bits (64), Expect = 3.2
Identities = 20/59 (33%), Positives = 22/59 (37%)
Frame = -2
Query: 892 ATPAGPKEGXPRGPAFPRAXXTAXPGGVXXTTQXPXPXXSGXXXXGGGASXPGPTXXXG 716
A P+GP P GPA P A PG + P G G A PGP G
Sbjct: 177 AGPSGPGPAGPPGPAGP-AGNDGAPGAPGGPGE-PGASEQGGPGEPGPAGPPGPAGPAG 233
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 29.5 bits (63), Expect = 4.2
Identities = 20/58 (34%), Positives = 21/58 (36%)
Frame = -2
Query: 889 TPAGPKEGXPRGPAFPRAXXTAXPGGVXXTTQXPXPXXSGXXXXGGGASXPGPTXXXG 716
+PAGP P GP P PG Q P G GG A PGP G
Sbjct: 190 SPAGPSGPGPAGPPGP----AGPPGNDGQPGQPGGPGQDGASSAGGEAG-PGPAGPPG 242
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 29.5 bits (63), Expect = 4.2
Identities = 21/75 (28%), Positives = 22/75 (29%)
Frame = +1
Query: 163 PXTGRXGXLXXWLXXXXGAXRRRRXGGXRGXXXPXPSXXGGRXGGAXPGGXXFXPXXGAR 342
P GR G W G GG G + GGR GG GG G
Sbjct: 53 PGWGRGGGGSGWGGGRGGGWGNNGGGGNWGGNGGGGNGGGGRGGGGGGGGGRGGGGGGRG 112
Query: 343 ARXGRXXXXGDXXGG 387
G G GG
Sbjct: 113 GGGGGGGGRGGGGGG 127
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 9.7
Identities = 21/60 (35%), Positives = 21/60 (35%)
Frame = +3
Query: 714 PPXXXVGPGXXAPPPXXXXPEXXGXGXWVVXXTPPGXAVXXARGXAGPRGXPSLGPAGVA 893
PP G PP P G TP A G GPRG P GPAG A
Sbjct: 145 PPCKPCPQGPPGPPGPPGAPGDPGEAG-----TPGRPGTDAAPGSPGPRGPP--GPAGEA 197
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.3 bits (60), Expect = 9.7
Identities = 21/60 (35%), Positives = 21/60 (35%)
Frame = +3
Query: 714 PPXXXVGPGXXAPPPXXXXPEXXGXGXWVVXXTPPGXAVXXARGXAGPRGXPSLGPAGVA 893
PP G PP P G TP A G GPRG P GPAG A
Sbjct: 140 PPCKPCPQGPPGPPGPPGAPGDPGEAG-----TPGRPGTDAAPGSPGPRGPP--GPAGEA 192
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.3 bits (60), Expect = 9.7
Identities = 21/60 (35%), Positives = 21/60 (35%)
Frame = +3
Query: 714 PPXXXVGPGXXAPPPXXXXPEXXGXGXWVVXXTPPGXAVXXARGXAGPRGXPSLGPAGVA 893
PP G PP P G TP A G GPRG P GPAG A
Sbjct: 140 PPCKPCPQGPPGPPGPPGAPGDPGEAG-----TPGRPGTDAAPGSPGPRGPP--GPAGEA 192
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 9.7
Identities = 21/69 (30%), Positives = 23/69 (33%)
Frame = -2
Query: 490 GAXRGGVPXXXXXXXGGPSXXXPGXGGAPXXXXPLXXXGRRPPXXXRXSPGPPXXGXTXL 311
G GG+P G P GG+ P G PP PGPP
Sbjct: 1553 GPPMGGLPPPHGGMNGWRGGPPPPRGGSHCQGPP-PLMGGPPPRLGMPPPGPPPPN---- 1607
Query: 310 XLGGPRPXS 284
GGP P S
Sbjct: 1608 --GGPPPPS 1614
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,183,329
Number of Sequences: 27780
Number of extensions: 143488
Number of successful extensions: 552
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2793417546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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