Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP11_F_C06
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 33 0.071
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 0.50
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 29 0.88
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 28 1.5
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.0
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 27 4.7
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.7
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 4.7
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 26 6.2
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 8.2
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 26 8.2
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 32.7 bits (71), Expect = 0.071
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = +1
Query: 292 QPNFISMFTTLLNTQTL---VDVTLAAEGKHLQAHKVVLSACSTYFQALFVD-NPSRHPI 459
QP + S T+LL+ L D+ A + + AHK L+A S+YF++ F PS H I
Sbjct: 148 QP-YASHITSLLSNSALHFTTDIVFAGQYGRVFAHKFYLAARSSYFKSKFSKLGPSEHEI 206
Query: 460 VI 465
+
Sbjct: 207 EV 208
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 0.50
Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
Frame = +1
Query: 550 PQVLDTAKLLKIKGLTEMPDSTSLTRSQGTSADFQSPGESVDSQRHSASPA-SSPSNKRK 726
P + TAK + + S S RS S + S SA+PA +S S +
Sbjct: 1228 PVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPARTSVSRSKS 1287
Query: 727 RFVRXKSSTGSTSLNMVMGEEHRSEEAHNIXMMRESITLSSVPQQXRRNT 876
+ R ++ST S + GE H HN S T +S+ Q R +
Sbjct: 1288 KAERHETSTSSRK-SSKSGEHHHH---HNEGHADSSSTRTSLAHQDSRKS 1333
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 29.1 bits (62), Expect = 0.88
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +1
Query: 616 SLTRSQGTSADFQSPGESVDSQRHSAS-PASSPSNKRKRFVRXKSSTGS 759
SL +++ +++ P + S++H S P+ +PS K+K++VR K S
Sbjct: 530 SLRQTKFKQSNYTPPELNDGSRQHRPSRPSKNPSLKKKKYVRTKPKKAS 578
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 592 LTEMPDSTSLTRSQGTSADFQ--SPGESVDSQRHSASPASSPSN 717
L MP S S +S Q SP +S+ S + +SP SPSN
Sbjct: 78 LATMPSVASSNPSLISSGSSQTGSPSQSLSSNKEPSSPGISPSN 121
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +1
Query: 610 STSLTRSQGTSADFQSPGESVDSQRHSASPASSPSNKR---KRFVRXKSSTGSTSLNMVM 780
S+S S +S+ +S S S + SASP+SS S+ + F+ + S+S ++
Sbjct: 183 SSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSSSGAIV 242
Query: 781 GEEHRSEEAHNIXMMRESITLSSV 852
+ + + ++SSV
Sbjct: 243 SNAKTASTDDSSSASSATSSVSSV 266
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 26.6 bits (56), Expect = 4.7
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -1
Query: 190 IMRPVILFHFCRTIFHEKLLI 128
++RP +L + C+ +FH + +I
Sbjct: 489 LLRPAMLIYLCKELFHRRTII 509
>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 529
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +1
Query: 601 MPDSTSL-TRSQGTSADFQSPGESVDSQRHS-ASPASSPSNK---RKRFVRXKSSTGSTS 765
+PD+TS T + + + G QR + ASPA+SPSN+ F + S+ S S
Sbjct: 427 LPDATSSSTPTTENKESWTNQGIKSSQQRSANASPATSPSNQASIHASFTKESSTHSSPS 486
Query: 766 LNM 774
+
Sbjct: 487 FTL 489
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 4.7
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 8/73 (10%)
Frame = +1
Query: 637 TSADFQSPGESVDSQRHSASPA-------SSPSNKRKRFVRXKSSTG-STSLNMVMGEEH 792
TS SP ESV HSAS A S N++KR + G L +E
Sbjct: 29 TSLSVSSPNESVIHSSHSASEADEYVCKLSYEGNRKKRIYNGSAEAGKEKKLQKQRAQEE 88
Query: 793 RSEEAHNIXMMRE 831
R + + RE
Sbjct: 89 RIRQKEAERLKRE 101
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +1
Query: 664 ESVDSQRHSASPASSPSNKR---KRFVRXKSSTGSTSLN 771
++ + RH AS AS+ N+ +R ++STGS+S N
Sbjct: 4 QNTSNSRHPASSASALPNRTNTARRSTSPRTSTGSSSTN 42
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 637 TSADFQSPGESVDSQRHSASPASSPSNKRKRFVRXKSSTGSTSLNM 774
TS++ + ++ + SS S+KRK+ + KS S SLN+
Sbjct: 157 TSSNMSPNSVQNNMNLNTVALGSSTSSKRKKKKKKKSKANSASLNV 202
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -1
Query: 766 VMWSX-SNFSCAQNVSVCWRATTR 698
V W SNFSC + SVC RA +
Sbjct: 225 VSWGLISNFSCPDDESVCHRADNK 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,479,621
Number of Sequences: 5004
Number of extensions: 70663
Number of successful extensions: 202
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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