Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP11_F_C06
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.         138   5e-35
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.     134   1e-33
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      40   3e-05
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.93 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.93 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   4.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.6  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score =  138 bits (335), Expect = 5e-35
 Identities = 67/135 (49%), Positives = 92/135 (68%), Gaps = 1/135 (0%)
 Frame = +1

Query: 262 QQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAAEGKHLQAHKVVLSACSTYFQALFVDN 441
           Q Y LRWNN+Q N  S+F  LL T+  VDVTLA     L+AHKVVLSACS+YFQ L + N
Sbjct: 9   QHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSN 68

Query: 442 PSRHPIVIL-KDVTFADLRTMVDFMYYGEVNVTEEQLPQVLDTAKLLKIKGLTEMPDSTS 618
           P +HP +I+ +DV F DL+ +++F+Y GE++V++ +L  +L TA  LKIKGL E+P+S  
Sbjct: 69  PCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRD 128

Query: 619 LTRSQGTSADFQSPG 663
              S   S+  + PG
Sbjct: 129 GPPSVSLSSPPREPG 143


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score =  134 bits (324), Expect = 1e-33
 Identities = 57/119 (47%), Positives = 84/119 (70%)
 Frame = +1

Query: 259 SQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAAEGKHLQAHKVVLSACSTYFQALFVD 438
           +Q + LRWNN+Q +  S F  L + +  VDVTLA +G+ L+AH+VVLSACS YF+ L   
Sbjct: 4   TQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACDGRSLKAHRVVLSACSPYFRELLKS 63

Query: 439 NPSRHPIVILKDVTFADLRTMVDFMYYGEVNVTEEQLPQVLDTAKLLKIKGLTEMPDST 615
            P +HP+++L+DV F+DL  +V+F+Y+GEVNV +  L   L TA++L++ GLT+  D T
Sbjct: 64  TPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLTQQADQT 122


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 39.9 bits (89), Expect = 3e-05
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +1

Query: 259 SQQYSLRWNNHQPNFISMFTTLLNTQTLVDVTLAAE 366
           +Q + LRWNN+Q +  S F  L + +  VDVTLA E
Sbjct: 4   TQHFCLRWNNYQSSITSAFENLRDDEDFVDVTLACE 39


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 529 NVTEEQLPQVLDTAKLLKIKGLTEMPDSTSL 621
           N  E+Q+P+ ++T +LL    + E P S +L
Sbjct: 28  NGREDQIPREMNTERLLPYVEIIEQPASKAL 58


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 529 NVTEEQLPQVLDTAKLLKIKGLTEMPDSTSL 621
           N  E+Q+P+ ++T +LL    + E P S +L
Sbjct: 28  NGREDQIPREMNTERLLPYVEIIEQPASKAL 58


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 113 NNQPTLTKYAPRPTPMRVAKIIK 45
           NNQPT+ K + R  P   A  +K
Sbjct: 873 NNQPTMNKCSDRKRPASQATSVK 895


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 628 SQGTSADFQSPGESVDSQRHSASPASSPSNK 720
           S GT++   S   S +S R + SP+ S S++
Sbjct: 177 SLGTASSTSSTASSRNSDRSAGSPSVSESDE 207


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 302 KLGWWLFHRRLYCCDMVLFTAYSY 231
           +LG++LFH  +  C +V+ +  S+
Sbjct: 243 RLGYYLFHTYIPTCLIVIMSWVSF 266


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 356 SLLKGSTCRHTR*CCRHAAHTF 421
           +++  ST R  +  CR+ AH F
Sbjct: 723 AIVSASTARSEQFLCRYEAHCF 744


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,282
Number of Sequences: 438
Number of extensions: 5169
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)